Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0785 ATGTTCTCACGAACACGCTCTGTTCTTCATCTTCTTCCCAACTCCCATGTAAAAAATTCAATCTCTTTATTCTGTTCTCAACACCAACAACAATTGCTTCAAATCTTTCAACTCCTTCAATCATTAACAAACCAAGGTCACATAAAACCCGCTCAAAAAATATTCAAATCGCTTCTTCTCTCCAATACCCATTACTATTTTCCTTCACAAATTCACTCACTCATTTCCAAACCCATCTTTCTACAAACCCTAATTCCCTTTTGTTCCAATCCCAATACTCTCAACAGAGTCATTCGATTGTTCTATTCGATGAAAAACGACGGATTTCTCCTTCCCATTTATTTACTCAACCGTATTCTACAAACTCTTGTTGATTCTCACCAGTTTGAAATAGCTCTCACTCTTTTTATCGATGTTGTTCAATCAGGTATTCGACCCAGTGCTTTTTCTTATGGTAAAGCTTTTCATTCTGCTCTTCATTCTGCTGTTAAGTTGAACTATTTAAGTTGTCAAAAGTTGATTGATTCAATGGAGAAAGATAGGATTATTAGTCCTTTTGTTTATGTGTATAATTTGGTATTGGGTGGGTTGTGTAAAGCGAAGAAAATTAAGGATGCACGGAAGGTGTTTGATGAAATGATTTATAGAAATGTTGTTCCTAATACGGTGACTTATAATACTATTATTGGTGGGTATTGTAAGGTGGGTGAAATAGAGGAAGCTTTGCAGGTGTTTGATGAAATGATTCGTAGAAATGTTGTTCCTAATACGGTGACTTATAATACGGTTATTGATGGGTATTGTAAGGTGGGTGAAATAGACAAAGCTTTTAGCTTGAAAGGTAGGATGAAGGCTCCTTATTCGGAGCCGAATCTTGTTACTTACAATTGCTTGTTAAATGGTCTTTGTAGTTTGGGGAGATTGGAAGATGCTAGGAGTGTGTTGTTGGAGATGGAGGGGAAGGGTTTTTTGCCTAGTGGGTTTTCGTATCTTGTATTCGATGATTATTTAGCTTGTGGAAACGAAAACGGTTTGCTGGATGGAAATGGAACAAGTGTTGATGAGCGTACTTATAGTGTTCTGTTGAATGGACTGTGCAGGGTAGGAAGGGTTGAAAAGGCTAAAGAGGTTTTGGATAAGCTAGAAGCTAATGGAGTTATTCCAAGTCATATATCATATAACATATTGGTGAATGCTTATTGTCAAGAGGATGACTTGAATAAAGCGATATTGACAGCTAAAGAAATGGAACAACGGGGGTTGAGGCCTAGTTATGTCACCTATAATACCCTAATTAACAAGTTCTGTGAAACTGGGGAGTTGTTGGACCAGGCACAAAGATGGGTTGAGAAAATGATAGAGAAGGGTGTTTCTCCCACTGTGGAGACTTATAACTCTTTGATTAATGGTTATGGAATGGTGTGTAATTGGGACAGGTGTAACAAGATTCTTGAGGAAATGGAAGAGAAAGGGATAAAGCCTAATGTCATAAGTTATGGTTCTCTGATAAATTGTCTGTGCAAATATCGTAGGCTTCGTGATGCTGAAATTGTGCTTGATGATATGGTATGCCACGGTGTTTCCCCAAATGCAGAAATATATAATATGCTCATTGAAGCTAGTTTCTCATTGAGTAAACTGACTGACGCCTTTATATTTTTCGATGAAATGGTAAAAAATGGAATAGATGCAACTCTTGTGACATACAATACACTGATAAATGGACTCGGAAGAAATGGATGGTTAAAAGATGCTGAGTATTGGTTTCTCCAAATTACCGAAAAGGGATATAATCCAGATGTGATTACATACAATTCCTTAATGTCAGGATATGCAATGTCAGGAAATACCGCGAAGTGCCTCGAATGGTACGGTAAAATGAAGAAGAGGGACATAAAACCTTCAATTGGAACTTTTCATCCATTGATCTATTCATGTAGGAAGGAAGGTATAGTGGCGATGGAGAAAATGTTTCAAGAAATGTTAGCAATGGGTTTGATTCCAGATCGAGCTGTATATAATGAAATGATTTATGGTTATGCTGAAGATGGAAATGTTCTGAAGGCAACATCTATGCACCAACAAATGGTTGATCAGGGAGTTGATTCCGACAAGGTGACCTACAACTGCTTGATTCTAGCACACCTTAGAGATAGAAGGGTCTCAGAAATAAAACATCTTTTTGATGATATGAAGGCAAAGGGACTGGTTCCAAAAAATGATACATATAAAATTCTGGTTAAGGGACATTGTGACTTAAAAGATTTCAATGGTGCATATTTTTGGTATAGGAAAATGTTTGACGCCAAGTTCATTTTAAATGACCGCATCCGCTACCAGCTGATATCTGGGCTTAGCGAAGAGGGAATGTTACGTGAAGCCCAAATTGTATCCTCAGAATTGAGTAGTAGAGTTCAACAACTTGAAGGCTAA 2433 0.3748 MFSRTRSVLHLLPNSHVKNSISLFCSQHQQQLLQIFQLLQSLTNQGHIKPAQKIFKSLLLSNTHYYFPSQIHSLISKPIFLQTLIPFCSNPNTLNRVIRLFYSMKNDGFLLPIYLLNRILQTLVDSHQFEIALTLFIDVVQSGIRPSAFSYGKAFHSALHSAVKLNYLSCQKLIDSMEKDRIISPFVYVYNLVLGGLCKAKKIKDARKVFDEMIYRNVVPNTVTYNTIIGGYCKVGEIEEALQVFDEMIRRNVVPNTVTYNTVIDGYCKVGEIDKAFSLKGRMKAPYSEPNLVTYNCLLNGLCSLGRLEDARSVLLEMEGKGFLPSGFSYLVFDDYLACGNENGLLDGNGTSVDERTYSVLLNGLCRVGRVEKAKEVLDKLEANGVIPSHISYNILVNAYCQEDDLNKAILTAKEMEQRGLRPSYVTYNTLINKFCETGELLDQAQRWVEKMIEKGVSPTVETYNSLINGYGMVCNWDRCNKILEEMEEKGIKPNVISYGSLINCLCKYRRLRDAEIVLDDMVCHGVSPNAEIYNMLIEASFSLSKLTDAFIFFDEMVKNGIDATLVTYNTLINGLGRNGWLKDAEYWFLQITEKGYNPDVITYNSLMSGYAMSGNTAKCLEWYGKMKKRDIKPSIGTFHPLIYSCRKEGIVAMEKMFQEMLAMGLIPDRAVYNEMIYGYAEDGNVLKATSMHQQMVDQGVDSDKVTYNCLILAHLRDRRVSEIKHLFDDMKAKGLVPKNDTYKILVKGHCDLKDFNGAYFWYRKMFDAKFILNDRIRYQLISGLSEEGMLREAQIVSSELSSRVQQLEG* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
Tpr6g0785 810 Gene3D Tetratricopeptide repeat domain 346 443 IPR011990 GO:0005515
Tpr6g0785 810 Gene3D Tetratricopeptide repeat domain 548 651 IPR011990 GO:0005515
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 459 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Tpr6g0785 810 Gene3D Tetratricopeptide repeat domain 239 345 IPR011990 GO:0005515
Tpr6g0785 810 Gene3D Tetratricopeptide repeat domain 444 547 IPR011990 GO:0005515
Tpr6g0785 810 Gene3D Tetratricopeptide repeat domain 78 238 IPR011990 GO:0005515
Tpr6g0785 810 SUPERFAMILY HCP-like 393 633 - -
Tpr6g0785 810 Gene3D Tetratricopeptide repeat domain 652 809 IPR011990 GO:0005515
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Tpr6g0785 810 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 29 243 - -
Tpr6g0785 810 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 238 802 - -
Tpr6g0785 810 Pfam PPR repeat 289 319 IPR002885 -
Tpr6g0785 810 Pfam PPR repeat 184 213 IPR002885 -
Tpr6g0785 810 Pfam PPR repeat 352 381 IPR002885 -
Tpr6g0785 810 Pfam PPR repeat 672 701 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 567 601 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 426 461 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 293 326 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 357 389 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 497 531 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 223 257 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 391 424 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 706 738 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 602 635 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 258 284 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 463 496 IPR002885 -
Tpr6g0785 810 TIGRFAM PPR: pentatricopeptide repeat domain 672 701 IPR002885 -
Tpr6g0785 810 Pfam PPR repeat family 529 577 IPR002885 -
Tpr6g0785 810 Pfam PPR repeat family 599 646 IPR002885 -
Tpr6g0785 810 Pfam PPR repeat family 459 508 IPR002885 -
Tpr6g0785 810 Pfam PPR repeat family 704 751 IPR002885 -
Tpr6g0785 810 Pfam PPR repeat family 220 269 IPR002885 -
Tpr6g0785 810 Pfam PPR repeat family 388 436 IPR002885 -
Tpr6g0785 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Tpr6g0785 810 PANTHER ATPASE EXPRESSION PROTEIN 3 238 802 - -
Tpr6g0785 810 PANTHER ATPASE EXPRESSION PROTEIN 3 29 243 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0785 350 801 Glycosyltransferase AT1G05670 26.049 8.10e-59 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0785 - - gmx:100786292 946.806