Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0723 ATGGAAGCAGTACTTGCGTCCCGCCATTTCTCGACGCCTCTCTCTCACCATCGAACCACCTTCTCCTGCTCCTCCTCCTCTTCCTCTTCTATCAAGCTTGGCTCTTCCCTTTCTTTCAGAAATTCCTTCGCTAAAGAGATATGGGGATTGGTTCAGTCGAAGAGCATAACTGTCAAAACAACGGACATGATTCGTCCAGTTTTGGTGAGAGCTGAAATGTTCGGTCAGTTAACTACTGGTCTTGAATCTGCCTGGAACAAGCTCAAAGGAGAAGAGGTTTTGACTAAAGATAATATTGCGGAACCTATGCGAGATATAAGGAGAGCTCTTTTAGAAGCTGATGTAAGTCTTCCTGTTGTAAGAAGGTTTGTGCAATCTGTTAGTGATCAAGCTGTGGGTGTTGGAGTCGTTCGAGGAGTTAAACCCGATCAACAATTGGTTAAGATTGTTTATGATGAACTTATAAAATTAATGGGAGGAGAGGTCTCTGAACTGACTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACCGTGTGTGCAAAGTTAGCAAGTTATTTCAAGAAACAGGGGAAGAGTTGCATGCTAGTTGCCGGGGATGTTTACAGACCTGCTGCTATTGACCAGCTTACTATTTTGGGCAAACAGGTGAATGTGCCTGTCTATACAGCAGGTACCGATGTCAAACCTTCAGATATTGCTAAACAAGGTTTTGAAGAGGCCAAAAAGAAGAATATTGATGTGGTTATTGTTGATACTGCTGGTAGGCTGCAGATAGACAAAGCCATGATGGATGAATTAAAAGATGTGAAACGGGTACTGAATCCAACAGAAGTCTTGTTAGTTGTGGATGCTATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGGATAACTGGTGCCATCTTGACAAAGCTAGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGCTTGTAGGACGGGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCTGACCGAATGGCTGGACGCATACTAGGAATGGGAGATGTTCTTTCATTTGTGGAGAAGGCACAAGAAGTTATGCAACAAGAAGAAGCTGAAGACCTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACTCGTACTGTTGCAAAAATGGGTTCTGTGTCTCGTGTCATTGGGATGATTCCTGGTATGGCTAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAGAAGAATTTGCAAAATATGGAAGTGATAATAGAAGCAATGACCCCAGAGGAAAGGGAAAAGCCAGAACTGTTGGCCGAGTCCCCTATTAAGAGGAAAAGAGTTGCTAAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTCATAGCTCAACTATTTCAAATGCGTGTTCGGATGAAGAAACTAATGGGTGTAATGGAAGGTGGATCATTGCCAACACTTAGTAATCTTGAGGAAGCACTTAAATCAGAGGAAACGGCTCCAGCTGGTACCGCAAGGAGGAAAAAGAAATGGTCACAGAGATATTTTGGGCGCAGATGA 1638 0.4359 MEAVLASRHFSTPLSHHRTTFSCSSSSSSSIKLGSSLSFRNSFAKEIWGLVQSKSITVKTTDMIRPVLVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVVRGVKPDQQLVKIVYDELIKLMGGEVSELTFAKSGPTVILLAGLQGVGKTTVCAKLASYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVNVPVYTAGTDVKPSDIAKQGFEEAKKKNIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEEAEDLQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMAKVTPAQIREAEKNLQNMEVIIEAMTPEEREKPELLAESPIKRKRVAKDSGKTEQQVSQLIAQLFQMRVRMKKLMGVMEGGSLPTLSNLEEALKSEETAPAGTARRKKKWSQRYFGRR* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0723 545 CDD SRP_G 173 365 - -
Tpr6g0723 545 Hamap Signal recognition particle 54 kDa protein [srp54]. 77 517 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Tpr6g0723 545 Pfam SRP54-type protein, GTPase domain 172 367 IPR000897 GO:0005525|GO:0006614
Tpr6g0723 545 Gene3D - 76 377 IPR042101 -
Tpr6g0723 545 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 49 538 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Tpr6g0723 545 SMART SRP54_3 172 367 IPR000897 GO:0005525|GO:0006614
Tpr6g0723 545 Gene3D - 162 356 IPR027417 -
Tpr6g0723 545 TIGRFAM ffh: signal recognition particle protein 75 500 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Tpr6g0723 545 SUPERFAMILY Signal peptide-binding domain 398 499 IPR036891 GO:0006614|GO:0008312|GO:0048500
Tpr6g0723 545 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 340 353 IPR000897 GO:0005525|GO:0006614
Tpr6g0723 545 PANTHER BNAC02G02820D PROTEIN 49 538 - -
Tpr6g0723 545 Pfam SRP54-type protein, helical bundle domain 77 154 IPR013822 GO:0005525|GO:0006614
Tpr6g0723 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 425 IPR027417 -
Tpr6g0723 545 SMART SRP54_N_2 73 158 IPR013822 GO:0005525|GO:0006614
Tpr6g0723 545 Gene3D - 378 502 IPR036891 GO:0006614|GO:0008312|GO:0048500
Tpr6g0723 545 SMART AAA_5 171 318 IPR003593 -
Tpr6g0723 545 MobiDBLite consensus disorder prediction 522 545 - -
Tpr6g0723 545 Pfam Signal peptide binding domain 398 496 IPR004125 GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0723 Tpr-Chr6 5998731 6008746 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0723 K03106 - gmx:100782581 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0723 6 5998731 6008746 Tpr6g0723 6 5998731 6008746 ECH