LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g0719	ATGTCTGGTAAAGAAAAAGGTGTTAACGTTCAAGTTCTTCTTCGATGCAGGCCGTTTAGTGATGACGAGTTACGGAGTAACGCGCCGCAAGTGGTTACTTGCAATGATTACAGTAGAGAAGTTGCGGTGTCTCAGAATATTGCCGGTAAACACATCGATAGGGTTTTCACCTTTGATAAGGTTTTCGGTCCGTCTGCACAACAAAGGGAACTTTATGAACAAGCAGTTACACCGATTGTAAACGAAGTTCTGGAGGGATTTAATTGTACCATATTTGCTTATGGTCAAACTGGTACTGGTAAAACATTTACTATGGAAGGAGAATGCAAAAGATCGAAGAGTGGGCCTAATGGAGAGTTGCCTCCGGAAGCAGGAGTAATTCCTAGGGCTGTTAAGCAGATTTTTGACACACTTGAGAGCCAGAATGCCGAGTATAGTGTGAAAGTAACCTTTTTAGAACTGTATAATGAGGAGATTACTGATTTACTTGCTCCAGAAGAGCTTTCAAAGGTTAGTTTGGAAGAGAAGCAAAAAAAGCAGCTGCCTCTCATGGAGGATGGCAAAGGTGGAGTTCTTGTAAGAGGGTTGGAAGAGGAAATTGTGACGTGTGCTAGTGAGATTTATACTCTTCTTGAAAGAGGGTCTTCTAAACGGCGCACTGCAGAAACTTTACTAAACAAACAATCTAGTCGTTCACATTCATTGTTTTCGATTACAATCCACATCAAAGAAGCAACCCCTGAAGGTGAAGAACTAATTAAGTGTGGTAAACTGAATTTGGTGGATCTTGCCGGTTCAGAAAATATATCTCGTTCTGGTGCTAGGGAGGGACGTGCACGAGAAGCTGGAGAAATTAATAAAAGTTTGCTTACATTAGGGCGAGTGATTAATGCACTTGTGGAGCACCTTGGTCATATCCCTTACAGGGATAGCAAGCTGACTCGTTTACTCCGTGATTCACTTGGGGGAAGAACCAAGACATGCATTATAGCGACAGTATCCCCTGCTGTTCATTGCTTAGAGGAAACTTTGAGCACATTGGATTATGCACATAGGGCAAAGAACATTAGGAATAAGCCAGAGGTCAACCAAAAAATGATGAAATCAACACTTATCAAGGATCTTTATGGTGAAATTGACCGCCTTAAGGCCGAGGTTTATGCTACCCGTGAGAAAAATGGCGTCTATATTCCAAAGGAAAGATACTATCAAGAAGAGATTGAAAAGAAGGCTATGGCAGATCAGATTGAGCAGATGGGCATCACAATAGAATCTTATCAGAAGCAACTGGAGGATATGAGAAACAAGTATGATGATCAAGTTCGCCAGTGCTCTGATTTAAGCAACAAACTTGATACCACCGAGAAAAACTTGAACAAAACTAGCAAGGTTCTTGGCAATAGAGAGGAAGAATTGAAAAAGTGTCGCTATACCCTGAATGAAAAGGAATTCATCATATCTGAACAGAGAAAAGCAGAAAATGCTCTAGCTCATCAAGCATGCGTTTTACAAGCTGATTTAGAAAAAGCTCTTCAGGATAATGCCTCATTATTTCTGAAAATTGGCAGAGAAGATAAACTTAGCTCAGAAAATAGAGCTGTTGTGAACAATTATCAAGCGGAACTTGCCCAGCAGGTTGGTTCTCTTTGCAACGTTGTTGCAACATCGTTGTCTGAACAGAATGGACATCTACAAGGTGTGGAGAAGCTCTGTAATTCCTTTTTGGGCATTCATGACAAGGCGGTTGTTGATTTGAAAGAGAAAATGAAAGAATTGAGGGGGGTGTATGTGTCGCATATTGAGGCAGTGCAAAATGTTGTGCGTTTGCATATGGCAAACTCGGATGCATCCTTGGAGGAGTTATCATCTGCCATATCCTCTCACGGTCATTCAATAGAAGAATTCCTTACTATCGCGTCCACGGAAGCCGGCTCAATATTTGACGAGCTTCAGAGCTGCCTTTCAACACAACATGGTGAATTGACACTTTTTGCTAAGGAAGTACGCAATAGGTTCAATCTTAGTGTGGAACAAATAAAGGAGATATCTGAGAAATCTGAAGAATTAGTGGAAAAGCTTTTTGGAGAATCAAAAAAGCTTGAGGATTTTGTAGCACAGGCTGACCAAATGCAAACAGATAGCATTGAAGAGTTTAAGAAAGCTTATGAGGAGCAATCAAAATCTGAGTCAGAGAAACTCATTGCTGATATGACTAGTTTGGTTTCTGATGTCATTCGTCGTCAAAATGATCTTGTAAACTCAAAGCTTGTTGGTCTTAGAGAAAATGGTATAAAGAACAAGTCATTCTTGGTTGGACACGCGTCATCAGTGGGAGAAATTGTCACCAGTGCAAAAAGAAAATGGCAGTCGTATACCATACAAGCAGAAAAAGAAGCAAAAGATACTGCTGACTATTCTGCAGCAAAGCATTGTCGTATGGAGGTACTCCTGCAGCAATGTGTTAACACGGCTCATTCGGCTTTTGGACAAGTGAAGAGGACACATGAGGCTGTAAATGAGTTAGGGGCCAAACATATTTTTGCGTCAAATTCACTTATCAGGAGTGCTTGTGATAGCAATGTGCAACATGTTGCTGAGGTCAATTCTGCTCGAGCAGCAGCCGAGGAAGATGTGGCAAAGAACAGTGACGATTTTCTTAAGCAGTTTGATGCCACATCTGCAGAAGAACGTGAGTCTGTATGTAGCGTCGTAAATGTTGTGAAAAGCCATGCATATACACTTGATAAGTTCAGGGAGGATCATGCTGGACAAGCTACTTCCATTGAACATAGGGCATGCGAGACTTTCCAGCAGGAGTATATGGACTATGAGCCTAGTGGTACAACGCCGATAAGATGTGAGCCTGAGGTTCCGAGTAAAGGTACAATTGACTCTCTTCGAACGTTGCCAATCGAAACCCTTCTTGAGGAATTCCGGGAAAATAATTCATATGAATCTTCTTCTGATGTAAAGGAGTTGAAACCATCACTTATTCCACGCTCTCCTCTCACCCAATTGAATTAA	3024	0.4144	MSGKEKGVNVQVLLRCRPFSDDELRSNAPQVVTCNDYSREVAVSQNIAGKHIDRVFTFDKVFGPSAQQRELYEQAVTPIVNEVLEGFNCTIFAYGQTGTGKTFTMEGECKRSKSGPNGELPPEAGVIPRAVKQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPEELSKVSLEEKQKKQLPLMEDGKGGVLVRGLEEEIVTCASEIYTLLERGSSKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIRNKPEVNQKMMKSTLIKDLYGEIDRLKAEVYATREKNGVYIPKERYYQEEIEKKAMADQIEQMGITIESYQKQLEDMRNKYDDQVRQCSDLSNKLDTTEKNLNKTSKVLGNREEELKKCRYTLNEKEFIISEQRKAENALAHQACVLQADLEKALQDNASLFLKIGREDKLSSENRAVVNNYQAELAQQVGSLCNVVATSLSEQNGHLQGVEKLCNSFLGIHDKAVVDLKEKMKELRGVYVSHIEAVQNVVRLHMANSDASLEELSSAISSHGHSIEEFLTIASTEAGSIFDELQSCLSTQHGELTLFAKEVRNRFNLSVEQIKEISEKSEELVEKLFGESKKLEDFVAQADQMQTDSIEEFKKAYEEQSKSESEKLIADMTSLVSDVIRRQNDLVNSKLVGLRENGIKNKSFLVGHASSVGEIVTSAKRKWQSYTIQAEKEAKDTADYSAAKHCRMEVLLQQCVNTAHSAFGQVKRTHEAVNELGAKHIFASNSLIRSACDSNVQHVAEVNSARAAAEEDVAKNSDDFLKQFDATSAEERESVCSVVNVVKSHAYTLDKFREDHAGQATSIEHRACETFQQEYMDYEPSGTTPIRCEPEVPSKGTIDSLRTLPIETLLEEFRENNSYESSSDVKELKPSLIPRSPLTQLN*	1008

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g0719	1007	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	9	396	IPR027417	-
	Tpr6g0719	1007	CDD	KISc_BimC_Eg5	7	365	-	-
	Tpr6g0719	1007	ProSitePatterns	Kinesin motor domain signature.	256	267	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Tpr6g0719	1007	Gene3D	Kinesin motor domain	2	387	IPR036961	-
	Tpr6g0719	1007	PANTHER	125 KDA KINESIN-RELATED PROTEIN-LIKE	3	1007	-	-
	Tpr6g0719	1007	PANTHER	KINESIN-LIKE PROTEIN KIF11	3	1007	-	-
	Tpr6g0719	1007	Coils	Coil	416	457	-	-
	Tpr6g0719	1007	Pfam	Kinesin motor domain	15	356	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr6g0719	1007	ProSiteProfiles	Kinesin motor domain profile.	9	356	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr6g0719	1007	PRINTS	Kinesin heavy chain signature	86	107	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr6g0719	1007	PRINTS	Kinesin heavy chain signature	223	240	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr6g0719	1007	PRINTS	Kinesin heavy chain signature	257	275	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr6g0719	1007	PRINTS	Kinesin heavy chain signature	306	327	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr6g0719	1007	MobiDBLite	consensus disorder prediction	980	1007	-	-
	Tpr6g0719	1007	SMART	kinesin_4	7	364	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g0719	Tpr-Chr6	5945004	5951454	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g0719	9	386	Miscellaneous Gene Families	AT5G06670	37.760	1.60e-62	224

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g0719	K10398		-	gmx:100800246	1638.62

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr6g0719	6	5945004	5951454	Tpr6g0719	6	5945004	5951454	ECH