Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0683 ATGGCCTATCCCTACATTCTCATTATCCTCTCTCTTCTCTCTTTCCTCCTCACATTCTCTTCTTCCAATGTCCTAAACCCAAACACCATTACCCTTCCTCTTTCCCCTCTATCCCCCAAATCCCAATCCTCAGATCTCTTCCACTCTCTCAAAACAGCAGCTACATCATCTCTATCAAGAGCTCACCATCTCAAAACCCAAAAAACAAATCACAAATCACCCAAATCATCATCTTCAATAACCAACACACAAATTTTCTCAAAAAGCTATGGTGGTTACTCCATTAACCTCAATTTTGGAACACCATCACAAACCTTATCTTTTGTCTTAGACACAGGTAGTAGTCTTGTATGGTTCCCCTGTTCCTCTCACTACCTCTGTTCCAATTGCAACTTCCCAAACATAAACCCAACAAAAATCCCATCTTTCATTGCCAAAAACTCATCTTCCTCAAAAATCCTAGGTTGTACAAACTCAAAATGCGGTTACATTTTCGGACCGGACATCGAATCTCGTTGCGGAGATTGTAATCCAAAAACAGAAAACTGTAACAGCACCACTTGTCCTGCTTATATAGTTCAATATGGTTTAGGTTCAACCATTGGTTTCTTACTATTAGAAAATCTAAATTTTCCCGGAAAAACTGTTCAAGATTTTCTCGTAGGTTGTTCCATTGTATCAACCCGACAACCCTCCGGCATCGCAGGTTTTGGTCGCGGTGAAGATTCTCTTCCGTCGCAAATGGGTCTTAAAAGATTCTCTTATTGCTTACTTTCTCATCAATTCGACGACTCGCCGGAAAACAGTAACCTCGTTTTACAAGTTTCCTCCACCGGCGATACCAAAACAAAAGGATTAAGCTACACTCCGTTTAGAAAAAACCCATCAACGAATAACACTGCATTTCTTGAATACTATTACGTGAATCTACGTAGTATTGCTATCGGAGGAAAAAGAGTTAAGATTCCGTTAACAGTTTCTGAACCGGGAATTGACGGTAACGGTGGAACTATCGTTGATTCTGGATCAACGTTTACTTTTATGGAAAAAGAAATCTTTGATTTGGTTTCGAAAGAGTTTGAGAAACAGCTTAAGAATTTCACGAGAGCGAAAGAGGTTGAAGAAACATCGGGGTTGAGTCTCTGTTTTGATTTTACCGGAGTTATAAAAACGGTGTCGTTGCCGGAGGTTGTGTTTCAGTTTAAAGGGGGTGCAAAAATGAAGTTACCGGTTGAGAATTATTTTTCTTTGGTTGGTGAAGGGGATGTTGTTTGTTTAACTTTTGTTACTGATGGAGTTTCTGCGCCGGAGAGAAGTGGTGGTCCGGCGATTATTTTGGGGAATTATCAGCAGCAGAATTTTAATGTTGAGTATGATTTGGAAAATGATAGGTTTGGATTTGGACCTCAGAGTTGTCAAAAAAGTGCTTAA 1431 0.399 MAYPYILIILSLLSFLLTFSSSNVLNPNTITLPLSPLSPKSQSSDLFHSLKTAATSSLSRAHHLKTQKTNHKSPKSSSSITNTQIFSKSYGGYSINLNFGTPSQTLSFVLDTGSSLVWFPCSSHYLCSNCNFPNINPTKIPSFIAKNSSSSKILGCTNSKCGYIFGPDIESRCGDCNPKTENCNSTTCPAYIVQYGLGSTIGFLLLENLNFPGKTVQDFLVGCSIVSTRQPSGIAGFGRGEDSLPSQMGLKRFSYCLLSHQFDDSPENSNLVLQVSSTGDTKTKGLSYTPFRKNPSTNNTAFLEYYYVNLRSIAIGGKRVKIPLTVSEPGIDGNGGTIVDSGSTFTFMEKEIFDLVSKEFEKQLKNFTRAKEVEETSGLSLCFDFTGVIKTVSLPEVVFQFKGGAKMKLPVENYFSLVGEGDVVCLTFVTDGVSAPERSGGPAIILGNYQQQNFNVEYDLENDRFGFGPQSCQKSA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0683 476 PANTHER OS07G0603500 PROTEIN-RELATED 6 472 - -
Tpr6g0683 476 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 108 119 IPR001969 GO:0004190|GO:0006508
Tpr6g0683 476 Pfam Xylanase inhibitor N-terminal 93 268 IPR032861 -
Tpr6g0683 476 MobiDBLite consensus disorder prediction 58 80 - -
Tpr6g0683 476 Gene3D Acid Proteases 273 476 IPR021109 -
Tpr6g0683 476 Pfam Xylanase inhibitor C-terminal 306 468 IPR032799 -
Tpr6g0683 476 Gene3D Acid Proteases 72 272 IPR021109 -
Tpr6g0683 476 SUPERFAMILY Acid proteases 89 472 IPR021109 -
Tpr6g0683 476 CDD pepsin_A_like_plant 92 472 IPR034161 -
Tpr6g0683 476 PANTHER BNACNNG47670D PROTEIN 6 472 - -
Tpr6g0683 476 ProSiteProfiles Peptidase family A1 domain profile. 93 468 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0683 Tpr-Chr6 5663477 5665474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0683 91 474 Miscellaneous Gene Families AT1G44130 24.455 2.79e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0683 - - gmx:100805927 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0683 6 5663477 5665474 Tpr6g0683 6 5663477 5665474 ECH