Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0655 ATGACCCGATTAACGGAAAAGCTCCGTTTGTCTTCCTTGTTCATCAAACCGACCCGTTTTCTCTCTCTTCTTTCTCTCTCTACTCTCCATCATCTCTGCAACTCCCTTACTCGTTTCATCTTCTCCCAAACCCTACCTTTCTTCTCCATGGACAACAATCTCTTCTCCGATAACGTCGATTACTTCGACGATGACTTCGATTCCTCTTACTCTCTTCGTCCTAACCGTCGCTTACTTCAACAAGATTACCGCGATTTCTCCGTTGAGAAGGTTTACTTGCTTCCCTATAGGTGGTGGATTGATGCAGAAGGTGAAGGTGATCGTGCGGAAGGTGTTTTGTATACAGTTTGTTCGAATTTTGATTCTGAGTCTGAAATTTTGCTTAATCTGAAGAAGGAAGAGGATCGTGAGAAGATTAAGAGTTTGGAGGTAGGTGTTTCAGGTCGTCATTATGCTTTGGTTCCTGAAGGACTTTGGTTGCGTGCTCTCAAACGGTATAATGATTTTAATAATGCAGTGAAGGATTTTGGGAGAATCTTCTATGCAGAAGAGGGTTTGCCAGATTTGTTCCCCTTGCAACTTAGGATAGTTGTTTCATGGGAAACCAGTTCACTTGTAGCAAAGATAAGCCAAGAGGAAAATGTGTCTGACTTCTACAAGAAAGCTTGTGACATTTTCAATTCTGCATATAACTCACTGTATATTTGGGACTTCTCTGGGCAGACAACCCAGCTTTTAGTAAATGACAATGCTAGGATGCCAAATGATTCTCTTGGTCAACTTGGAAAAGAGGTTCTTCTGGAGTTACAAGTTCACGGACTTTCAGATTCAATGAGGGGTAGTCAGAGCAATGGGATGATTTCAGATAGCTCTCAGATGGAATGTTCTTCTGACGGTGACCCTGTTACGATGAATGGAAGCACTGAGAATGTTATCCCTTATGTAACAGCAAACAACTATTTTCAAGACAGTAGCTATAGAGCAGTTCGATCTTTGGGATTGACAGGATTACATAATCTTGGTAATACCTGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCGTAAAGAGATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGAGATTTACTTAGAACGCTGTGGGTTCCTGGAGCATCACCTGTGGTACCAAGAATGTTCAAGATGAAACTAGCTAACTTTGCTCCTCAGTTTAGTGGTTATATGCAGCATGATTCTCAAGAACTGCTTGCTTTTTTGTTGGATGGACTGCACGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGTCGTCCTGATGGAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCAATAGTAGTTGATTTGTGCCAAGGTCAGTTCCGGTCGACATTGATTTGCCCTTTTTGCAAGAAGGTTTCTATCACCTTTGACCCTTTTATGTACCTATCTCTGCCATTACCTTCTACAACGATACGGACCATGACTGTGACAATCATGAGTACTGATGGGATCACATTGCCTTCTGCAATTACTGTAACAGTGCCTGAATGTGGAACACTTAAGCATCTTATTGGGGCCTTAACTGCTGTTTGTTCTCTGAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAAGAGTAAGATTTTTCGGGAATATGATGCATCTGACCCATTAGCTGATATTAGAGATCAAGACACACTTGTCGCTTACCGAGTGCAGAAGTATACTGAAGATAGCATCTTGATTTTTTTCACTCATGATCGTTTGGTGGAAAGTTACGGGAAGGAAAGGTTTGAAAATAGATTGTTTGGCATTCCAGTTGCAACAAGGCTGTCTGGTATTTCTTGTGGACGCGATGTTCATAGGGGGTTTCTGAATTTAATCAATCCATTTCTGATGCAAAACACGGAAGAAACAATAGATGAATATGATAAGGAGGACAGTGTTGTTGATGATGATACTAAAAAACCAAATGAAGTTGATGAATCAGGCGAAACTAATAACTCTGAAGCAATAGAAAGTGACGCAGTCTCGAACAGCGGAGCCGAGGATGACACATATTTGGGGACTGACTTTGAATTCTATCTAATGCTTTCTGGGAGAGTAAGTGACATTAAGATAACATCGAATGATGAACCATTACCTGTCGCAATGTTGTCCAGAAAGCATCTGTATCTACTTGTCGAATGGCCTGATGAGGTGCTTAAAAAGTATGACACAAACCTGCTTGGTTCATTGCCTGAGGTTTCCAAGCCCCAATTCTTCACCAAGAGAACACAAGAATCAGTATCTATTTACAAGTGCCTGGAAGCCTTCTTGAGAGAGGAACCTCTTGGGCCTGAAGACATGTGGTACTGTCCTACCTGCAAAAAACCTCAGCAAGCAACTAAAAAGTTGGACCTTTGGAGATTGCCTGAAATCCTTGTTGTTCATTTGAAGAGGTTCTCGTACAACCGATACTTCAAGAACAAGCTGGAAACTTTCGTTGACTTCCCAATTAATGATCTGGATTTGTCAACTTATGTCGCTCACAGGAGTTATCCATCTCCTAACTGCTATATGTTGTATGCCATTATTTGTCACTATGGCGGATTAGGAGGAGGTCACTATACAGCGTTTGTCCGTTATGGCCATGACAAATGGTATGAGTTTGATGATAACAGGGTTTCCCCTGCTGATGAGGAGATGATAAAGACTTCTGCTGCTTATGTTCTTTTCTACAAGAAAGTTTAG 2817 0.4139 MTRLTEKLRLSSLFIKPTRFLSLLSLSTLHHLCNSLTRFIFSQTLPFFSMDNNLFSDNVDYFDDDFDSSYSLRPNRRLLQQDYRDFSVEKVYLLPYRWWIDAEGEGDRAEGVLYTVCSNFDSESEILLNLKKEEDREKIKSLEVGVSGRHYALVPEGLWLRALKRYNDFNNAVKDFGRIFYAEEGLPDLFPLQLRIVVSWETSSLVAKISQEENVSDFYKKACDIFNSAYNSLYIWDFSGQTTQLLVNDNARMPNDSLGQLGKEVLLELQVHGLSDSMRGSQSNGMISDSSQMECSSDGDPVTMNGSTENVIPYVTANNYFQDSSYRAVRSLGLTGLHNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRTLWVPGASPVVPRMFKMKLANFAPQFSGYMQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDGEVAEEYWRNHLARNDSIVVDLCQGQFRSTLICPFCKKVSITFDPFMYLSLPLPSTTIRTMTVTIMSTDGITLPSAITVTVPECGTLKHLIGALTAVCSLRDDETLLVAEIYKSKIFREYDASDPLADIRDQDTLVAYRVQKYTEDSILIFFTHDRLVESYGKERFENRLFGIPVATRLSGISCGRDVHRGFLNLINPFLMQNTEETIDEYDKEDSVVDDDTKKPNEVDESGETNNSEAIESDAVSNSGAEDDTYLGTDFEFYLMLSGRVSDIKITSNDEPLPVAMLSRKHLYLLVEWPDEVLKKYDTNLLGSLPEVSKPQFFTKRTQESVSIYKCLEAFLREEPLGPEDMWYCPTCKKPQQATKKLDLWRLPEILVVHLKRFSYNRYFKNKLETFVDFPINDLDLSTYVAHRSYPSPNCYMLYAIICHYGGLGGGHYTAFVRYGHDKWYEFDDNRVSPADEEMIKTSAAYVLFYKKV* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0655 938 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 335 938 IPR028889 -
Tpr6g0655 938 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 56 938 - -
Tpr6g0655 938 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 56 938 - -
Tpr6g0655 938 SUPERFAMILY Cysteine proteinases 333 937 IPR038765 -
Tpr6g0655 938 MobiDBLite consensus disorder prediction 677 691 - -
Tpr6g0655 938 Gene3D Cysteine proteinases 659 938 - -
Tpr6g0655 938 MobiDBLite consensus disorder prediction 692 708 - -
Tpr6g0655 938 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 336 351 IPR018200 GO:0004843|GO:0006511
Tpr6g0655 938 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 881 898 IPR018200 GO:0004843|GO:0006511
Tpr6g0655 938 Gene3D Cysteine proteinases 319 563 - -
Tpr6g0655 938 MobiDBLite consensus disorder prediction 671 708 - -
Tpr6g0655 938 CDD Peptidase_C19R 778 936 - -
Tpr6g0655 938 Pfam Ubiquitin carboxyl-terminal hydrolase 335 935 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0655 Tpr-Chr6 5316637 5325303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0655 792 938 Miscellaneous Gene Families AT4G31670 33.333 5.00e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0655 - K21343 cam:101507058 1558.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0655 6 5316637 5325303 Tpr6g0655 6 5316637 5325303 ECH