Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0641 ATGGATTCGGGATCTTGGATTTCTTCTACCAAATCCCGATCCCCTTTCCCAGAACGCTTCCTCCAAAGAAAGAATTCTAATAAGGATAACTTGGATAGGTTTATCCCTAATAGATCTGCGATGAATTTCGATTATGCTCATTACATGTTGACGGAGGGTGCAAAGGCAAAAGAAAAAGAAAATTCAGCGTTGATGTCACCGTCTCGTTCAGCCTACCAGAAACTACTCGCTGAAGCCGCTAACATGAACCGAACCAGAATCTTGGCCTTCAAGAATAAGCCTCCGACACCGGTCGAACTCTTTCCTAGAGGAATTCTTTCACCTCCTCCTCAATCCAAAACCTCCAAACCCAAACGATGCATTCCTCAGACTTCTGAGAGGACATTGGATGCCCCTGATATATTAGATGACTTCTACTTGAATTTATTAGATTGGGGTAGCGGTAATGTCCTTAGTATCGCCCTTGAAAATACCGTTTATCTCTGGAATGCTTCTGATAGTTCCACTTCGGAACTTGTCACTGTGGATGATGAACATGGTCCTGTTACAAGTGTTAGCTGGGCCCCTGATGGTCGCCATTTAGCAGTTGGGTTAAACAATTCCCTTGTCCAGCTTTGGGATACAACTGCTAATAAACAGCTAAGGATATTGAAGGGTGGACACAGAGCAAGAGTGGGTTCACTGGCTTGGAACAATCATATTCTGACAACAGGAGGAATGGATGGTAAAATAGTAAACAATGATGTTAGAGTGAGATCTCACATCATTGAAACTTACAGAGGACACAACCAGGAGGTCTGTGGGCTCAATTGGTCACTGTCAGGACGACAATTGGCGAGTGGTGGAAACGATAATGTTGTTCACATATGGGATAGGTCTGCGGTTTCTTCAAATTCACGTACCCGTTGGCTTCACAGGTTTGAAGAACACACAGCTGCAGTGAAGGCACTGGCTTGGTGTCCTTTTCAGGCTAATCTATTGGCTTCTGGTGGAGGTGGAGGTGATCATTGCATTAAGCTGTGGAACACACACACGGGTGCGAGATTGAATTCTGTTGACACAGGATCTCAAGTATGTGCTCTGCTATGGAACAAGAACGAGCGTGAGCTTCTTAGCTCACATGGTTTCACTGAGAACCAGCTTACCCTTTGGAAGTATCCTTCAATGGTGAAGATGGCGGAGCTCAACGGTCATACCTCAAGGGTGCTGTATATGACGCAGAGTCCAGATGGGTGTACTGTTGCATCTGCAGCCGCGGATGAGACACTTAGATTTTGGAATGTCTTTGGAACCCCAGCACCACCATGCAAAGCAGCACCAAAGACATATAATGAGCCTTTTGCTGATTTCAATCGTATCCGTTGA 1365 0.4527 MDSGSWISSTKSRSPFPERFLQRKNSNKDNLDRFIPNRSAMNFDYAHYMLTEGAKAKEKENSALMSPSRSAYQKLLAEAANMNRTRILAFKNKPPTPVELFPRGILSPPPQSKTSKPKRCIPQTSERTLDAPDILDDFYLNLLDWGSGNVLSIALENTVYLWNASDSSTSELVTVDDEHGPVTSVSWAPDGRHLAVGLNNSLVQLWDTTANKQLRILKGGHRARVGSLAWNNHILTTGGMDGKIVNNDVRVRSHIIETYRGHNQEVCGLNWSLSGRQLASGGNDNVVHIWDRSAVSSNSRTRWLHRFEEHTAAVKALAWCPFQANLLASGGGGGDHCIKLWNTHTGARLNSVDTGSQVCALLWNKNERELLSSHGFTENQLTLWKYPSMVKMAELNGHTSRVLYMTQSPDGCTVASAAADETLRFWNVFGTPAPPCKAAPKTYNEPFADFNRIR* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0641 454 ProSitePatterns Trp-Asp (WD) repeats signature. 414 428 IPR019775 -
Tpr6g0641 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 216 IPR001680 GO:0005515
Tpr6g0641 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 428 IPR001680 GO:0005515
Tpr6g0641 454 Pfam WD domain, G-beta repeat 392 427 IPR001680 GO:0005515
Tpr6g0641 454 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Tpr6g0641 454 Pfam WD domain, G-beta repeat 304 342 IPR001680 GO:0005515
Tpr6g0641 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Tpr6g0641 454 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 21 454 IPR033010 GO:0010997|GO:0097027|GO:1904668
Tpr6g0641 454 SUPERFAMILY WD40 repeat-like 131 428 IPR036322 GO:0005515
Tpr6g0641 454 Pfam Anaphase-promoting complex subunit 4 WD40 domain 174 232 IPR024977 -
Tpr6g0641 454 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 21 454 - -
Tpr6g0641 454 Gene3D - 83 430 IPR015943 GO:0005515
Tpr6g0641 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515
Tpr6g0641 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 428 - -
Tpr6g0641 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 207 - -
Tpr6g0641 454 CDD WD40 157 427 - -
Tpr6g0641 454 SMART WD40_4 252 291 IPR001680 GO:0005515
Tpr6g0641 454 SMART WD40_4 168 207 IPR001680 GO:0005515
Tpr6g0641 454 SMART WD40_4 300 342 IPR001680 GO:0005515
Tpr6g0641 454 SMART WD40_4 210 248 IPR001680 GO:0005515
Tpr6g0641 454 SMART WD40_4 388 427 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0641 Tpr-Chr6 5229431 5232657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0641 182 371 Miscellaneous Gene Families AT5G08390 29.534 7.21e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0641 K03363 - gmx:100801495 726.087