Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0632 ATGAAATTCGGGGACACATTCAAAGAGTACTTGAAGAAAGAGAAGGAGTTGTTGTTGGATGAGAATTGTGCTCATATTGAATATAACAGGTTGAAAAAGGTGTTGAAGAGTTGTCAGAATTGTAAACATAACAACTCTTCTTCTGATGATGATAACGACCAGTTATGTCAATGTCAATCTTGCTCATTATGTGACCAGAAGTTCTTCTCCGAGTTGACGAAGGAAGCATCAGATATAGCAGGATACTTTAGTTCAAGAGTTCAGCATCTCCTTCACCTTCATATCGCAAAAGGACTGCACAGATATGTATTGCGTTTACGCCAGTGTTTTAAAAATGACAGGGAAACCCTTGTCCAAGAAGGGAGGATTCTAATTAAGTACATTACCATGAACGCAATTGCTGTGAGGAAAATACTTAAGAAATATGATAAAGTGCACAGCTCTATGAATGGGGAGAATTTCAAATCTAAGATGCAGGCTGAGCATATTGAACTTTTACACTCACCTTGGCTGATTGAATTGGGTGCTTTTTATCTGAATTCGAGTGGACTAGATGGTTCTGAGCTGCTTGATGGAGTCCGTGGTCACTTTTCATGTGATTTTAATGTAACGAATGCTGTAATGACATTAATTCTTCCAGATTCTATTAAGCTTGAGTATGATCTAACTTGTGCAATTTGTCTGGATTTTGTTTTCAATCCATATGCTTTGAGTTGTGGACACTTCTTCTGCAAGTCATGTGCTTGCTCTGCTGCATCTGTGATGACTTTCCAAGGCCTGAAAGCCGCAAGTCCAGAGTCAAAGTGTCCTATATGCAGAGAGGTAGGAGTTTATTCCAAAGCGGTACGAATGTTAGAACTCAATCTGCTTATGAAAAGAAGTTGCAAAGACTATTGGAAAGAGAGGCTGGCTAGGGAAAAAGTCGATGAGTTGAAGCAATCAAGAGAATTCTGGAATTTGCAGTCCACATATACAATTGGATTGCTGTAG 990 0.3909 MKFGDTFKEYLKKEKELLLDENCAHIEYNRLKKVLKSCQNCKHNNSSSDDDNDQLCQCQSCSLCDQKFFSELTKEASDIAGYFSSRVQHLLHLHIAKGLHRYVLRLRQCFKNDRETLVQEGRILIKYITMNAIAVRKILKKYDKVHSSMNGENFKSKMQAEHIELLHSPWLIELGAFYLNSSGLDGSELLDGVRGHFSCDFNVTNAVMTLILPDSIKLEYDLTCAICLDFVFNPYALSCGHFFCKSCACSAASVMTFQGLKAASPESKCPICREVGVYSKAVRMLELNLLMKRSCKDYWKERLAREKVDELKQSREFWNLQSTYTIGLL* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0632 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 327 IPR033326 -
Tpr6g0632 329 SMART ring_2 224 272 IPR001841 -
Tpr6g0632 329 ProSiteProfiles SPX domain profile. 1 156 IPR004331 -
Tpr6g0632 329 ProSiteProfiles Zinc finger RING-type profile. 224 273 IPR001841 -
Tpr6g0632 329 SUPERFAMILY RING/U-box 216 275 - -
Tpr6g0632 329 ProSitePatterns Zinc finger RING-type signature. 239 248 IPR017907 -
Tpr6g0632 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 324 IPR013083 -
Tpr6g0632 329 Pfam RING-type zinc-finger 224 270 IPR027370 -
Tpr6g0632 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1-LIKE-RELATED 1 327 - -
Tpr6g0632 329 CDD SPX_BAH1-like 2 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0632 Tpr-Chr6 5138455 5142843 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0632 K16275 - gmx:100781704 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0632 6 5138455 5142843 Tpr6g0632 6 5138455 5142843 ECH