Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0572 ATGGCAGAAGGAGAAGAGCGTATTGAGCTTAAATTCCGCATTTATGATGGAACGGATATAGCACATGATACTTATCCAGTATCTACTACAACAGTGGGTGCCCTTAAGCAAAAGCTAATTGCTGAGTGGCCTCAAGGCAAAAATGTTGTACCAAAGTCAGTCAATGATGTAAAACTTATACACGCCGGTAAAGTTTTGGAAAACACCAAAACGCTTGCTGATTCCAACATAACTTTCAGTGACATCCCTGGTGCTATTACCATGCATGTTGTAGTACAGCCTGCTATAGCTAAAAAAAAGACAGAAAAGGAGAACAAGCAAAAGATTAATTCGTGCTCATGCTCATGCACTATCCTATAG 360 0.4 MAEGEERIELKFRIYDGTDIAHDTYPVSTTTVGALKQKLIAEWPQGKNVVPKSVNDVKLIHAGKVLENTKTLADSNITFSDIPGAITMHVVVQPAIAKKKTEKENKQKINSCSCSCTIL* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0572 119 CDD Ubl_MUBs_plant 8 95 - -
Tpr6g0572 119 SUPERFAMILY Ubiquitin-like 4 96 IPR029071 -
Tpr6g0572 119 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 119 IPR040015 -
Tpr6g0572 119 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 115 IPR039540 -
Tpr6g0572 119 Gene3D - 1 101 - -
Tpr6g0572 119 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 119 - -
Tpr6g0572 119 ProSiteProfiles Ubiquitin domain profile. 8 77 IPR000626 GO:0005515
Tpr6g0572 119 PIRSF MUB 1 119 IPR017000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0572 Tpr-Chr6 4619303 4622387 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0572 - - gmx:100818909 171.014