Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0562 ATGAACAGCTTAACGGCGAGCTTCACCGCTCGAATATACGCCACACGCCGCGACGCAATTCCGTTACGACACCGTTCAATTCACCAATTCATTAACAGACGCGTCACTGTTCTTCCCACCAGAACTACTCTCACTTCTACTAGATTCGTATGCATGGCGGAACCTTATCTTTTATTGAAGCTTGAATCTGCTGAGAAAACATGGAAAGAATTATCGGTGAAGCTTGCTGATCCAGACATTGTTTCTAATCCCAGCGAGTATCAGAAGATAGCACAATCGGTGTCAGAGCTTGACGTGGTTGTGTCCATGTATCAGAAATTTAAAGACTGTGAGAAGATGCTTGAAGAAGCCAAAGCTTTATCAAAGGATGATGGCAATGACGAGGATATGGCGGAAATGATATCTTACGAAATTGAATCTTTGTCCAAGCAACTCACAGAGCTAGAGGACAAGCTGAAGGTTTTACTGCTTCCCAGTGATCCTCTGGATGCAAGAAACATAATGCTTGAAGTAAGAGCAGGTACTGGTGGCGATGAGGCTGGGATATGGGCTGGTGATCTTGTCCGAATGTATGAAAAATTTAGTGAACGTAATTCTTGGAAGCATTCTGCCATCTCATTCTCTGAGGCAGAAAAAGGGGGGTTCAAAACTTATGTGATGGAGATAAAAGGAAATCGTGTCTACAGTAAATTAAAATACGAATCTGGTGTCCACCGAGTTCAGCGTGTTCCTCTAACAGAAACACAGGGCCGCGTACATACTTCTACTGCAACAGTGGCCATTATGCCAGAGGTTGATGAAGTTGAAGTCACAATTGACCCAAAAGATATTGAAGTGACAACGGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAATAAGGTTGAAACAGCAATTGATCTTGTTCATAAACCAACGGGAATCCGCATCTTTTGTACTGAACAAAGGACACAGATTCAGAACAAGAATCTTGCTTTTAAGTTACTGCGAGCCAAACTATATGAGATAAAGGTAAGGGAGCAACAAGAGTCAATACGAAATCAAAGAAAATCACAGGTTGGTACAGGAGCACGTGCAGAAAAAATCCGGACCTACAATTTTAAGGACAACAGGGTTACTGACCACAGATTGAAGAGGAACTTTGAGCTCACCTCTTTTCTAGGTGGTGACATAGAGGATGCTGTTCAGTCTTGTGTTTCAATGGAACAAAAGGAGCTCATGGAAGAACTTGTTGAGTCTATGGGTGCTCCTGCTAGATAA 1260 0.431 MNSLTASFTARIYATRRDAIPLRHRSIHQFINRRVTVLPTRTTLTSTRFVCMAEPYLLLKLESAEKTWKELSVKLADPDIVSNPSEYQKIAQSVSELDVVVSMYQKFKDCEKMLEEAKALSKDDGNDEDMAEMISYEIESLSKQLTELEDKLKVLLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYEKFSERNSWKHSAISFSEAEKGGFKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEVDEVEVTIDPKDIEVTTARSGGAGGQNVNKVETAIDLVHKPTGIRIFCTEQRTQIQNKNLAFKLLRAKLYEIKVREQQESIRNQRKSQVGTGARAEKIRTYNFKDNRVTDHRLKRNFELTSFLGGDIEDAVQSCVSMEQKELMEELVESMGAPAR* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0562 419 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 7 417 - -
Tpr6g0562 419 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 283 299 IPR000352 GO:0003747|GO:0006415
Tpr6g0562 419 PANTHER LD18447P 7 417 - -
Tpr6g0562 419 Coils Coil 131 151 - -
Tpr6g0562 419 Hamap Peptide chain release factor 1 [prfA]. 57 411 IPR004373 GO:0006415|GO:0016149
Tpr6g0562 419 SUPERFAMILY Release factor 66 407 IPR045853 -
Tpr6g0562 419 SMART PCRF_a_2 119 234 IPR005139 GO:0006415
Tpr6g0562 419 Gene3D - 265 360 - -
Tpr6g0562 419 TIGRFAM prfA: peptide chain release factor 1 53 411 IPR004373 GO:0006415|GO:0016149
Tpr6g0562 419 Pfam RF-1 domain 266 376 IPR000352 GO:0003747|GO:0006415
Tpr6g0562 419 Gene3D - 51 161 - -
Tpr6g0562 419 Pfam PCRF domain 65 259 IPR005139 GO:0006415
Tpr6g0562 419 Gene3D - 169 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0562 Tpr-Chr6 4545085 4551190 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0562 K02835 - gmx:100777225 689.108