Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0542 ATGGCTACTCTTCCTGCTTCTCCTTCACCACCATGGCCAAACCCTAACCCTAATAATCCCAATTCTATTTCTATTCCAAACCCTAATTTCCTCCCCGATCAATCTCAAACCCTCGACTTCGATTCCCTTATGTCTCCCCAATCTCAATCACCGCCACACCACTCTCCCACCGCCACTTCACCGGAATCTTCCCCCACCACACCGCCACTTCCTCCATCGTTACTTCAACTCTCATTTAACCAAGACCACGCCTGCTTCGCCGCCGCAACTGACAACGGCTTCCGCATCTACAACTGCGATCCTTTCCGTGAACTCTTCCGCCGTGAATTCGGCGGTGGAGGAATCGGTCATGTAGAGATGCTTTTCCGATGTAATATATTAGCACTTGTCGGAGGTGGGTCCCACCCTCAGTATCCTCCTAATAAAGTCATGATCTGGGATGATCATCAAGGTACTTGCATCGGTGAGCTTTCGTTCCGTGCTGCCGTTCGCGGTGTTCGGCTTCGGAGGGATAGGATAATTGTTGTGGTGGAGCAGAAGATATTTGTGTATAATTTTGCTGACTTGAAACTTTTGCATCAGATTGAAACTATTGCAAACCCTAAAGGGCTTTGTGCAGTTTCACACTTGTCTGATTCTCTTGTTCTTGCTTGTCCTGGTTTGCATAAGGGTCAGATTCGTGTTGAGCATTTTGCACAGAAGAAGACTAAGTTCATTTCTGCTCATGATTCAAGGATAGCTTCCTTTGCTCTCACTCTTGATGGACAGTTAATCGCTACCGCCAGTGTCAAGGGCACGCTGATTCGGATTTATGATACCGATAATGGCACGCTACTTCAAGAAGTGAGAAGGGGTGCAAATGCAGCAGAGATATTTAGTTTGGCGTTTTCTTCGACTGCTCAGTGGTTAGCAGTTTCAAGTGACAAGGGTACTGTCCATGTTTTTGGCCTTAAGGTTAATTCAAGTGTCTCTGAGAATGAAAAGTCACAAGGTTCGTCAAGTTCAGATGCTACCGTTCCCCCATCTAGCTCGTCTCGCTCTTTCATTAAATTTAAAGGAGTGTTGCCCAAGTATTTCAACTCAGAGTGGTCAGTTGCTCGGTTTCACTTACACGAAGGCACTCAGTACACAGTTGCATTTGGTCTCCAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTCTATAGGTGCCAATTCGATCCGGCACATGGAGGTGAAATGACCCAGCTGGAATATCAAAACTTTTTAATTCCAGAGACAGCCTTGTGA 1275 0.4612 MATLPASPSPPWPNPNPNNPNSISIPNPNFLPDQSQTLDFDSLMSPQSQSPPHHSPTATSPESSPTTPPLPPSLLQLSFNQDHACFAAATDNGFRIYNCDPFRELFRREFGGGGIGHVEMLFRCNILALVGGGSHPQYPPNKVMIWDDHQGTCIGELSFRAAVRGVRLRRDRIIVVVEQKIFVYNFADLKLLHQIETIANPKGLCAVSHLSDSLVLACPGLHKGQIRVEHFAQKKTKFISAHDSRIASFALTLDGQLIATASVKGTLIRIYDTDNGTLLQEVRRGANAAEIFSLAFSSTAQWLAVSSDKGTVHVFGLKVNSSVSENEKSQGSSSSDATVPPSSSSRSFIKFKGVLPKYFNSEWSVARFHLHEGTQYTVAFGLQKNTVIILGMDGSFYRCQFDPAHGGEMTQLEYQNFLIPETAL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0542 424 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 26 424 - -
Tpr6g0542 424 MobiDBLite consensus disorder prediction 1 69 - -
Tpr6g0542 424 Gene3D - 73 398 IPR015943 GO:0005515
Tpr6g0542 424 MobiDBLite consensus disorder prediction 1 22 - -
Tpr6g0542 424 Pfam WD domain, G-beta repeat 285 315 IPR001680 GO:0005515
Tpr6g0542 424 MobiDBLite consensus disorder prediction 23 61 - -
Tpr6g0542 424 PANTHER WD REPEAT PHOSPHOINOSITIDE-INTERACTING-LIKE PROTEIN 26 424 - -
Tpr6g0542 424 SUPERFAMILY WD40 repeat-like 67 397 IPR036322 GO:0005515
Tpr6g0542 424 SMART WD40_4 275 316 IPR001680 GO:0005515
Tpr6g0542 424 SMART WD40_4 232 272 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0542 Tpr-Chr6 4385464 4388563 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0542 K22991 - gmx:100781692 617.846