Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0541 ATGAATGACATGAGTTTTTTGGCAGATAGAGTAGTTACCTTACTCAAAGGTTTTTGCCGTTCACAAATTCAACTCAAACAAATTCAATCACAAATCATACTTCACAATCTTCAATCAAATACAACAATCGCACTACACTTAATCAATGCATCTCAATCTCACAATCTTCTCAATTCTCTTTTACCTCTCTTCACAATCCTCACTCCAAAACCCCATGTTTTCATCTTCAATACTCTCATCAGAGCTTTCTCCCATTCCCATATCCCTCACACCCCTCTCTTTCTATACACCCATATGCAAAAAAACTCAATCTTTCCAAACAACTTCACATTCCCTTTTCTTTTCAAGTCACTTTCCGACTCAAATAACTTCATTCAATCCCAATGTGTTTACACCCATGTCATTAAACTCGGTCATTTGAATGATCTTTATGTTAATAACTCTCTTCTTGATGTATACGCTTCGTGTGGTTATGTTTCACTTTGTCGACAACTGTTCGATGAAATGTCTCACAGAGATGTTGTGTCTTGGACTGTGCTGATTATGGGTTATCGTTTTTGTGGGAAGTATGATGATGCATTGCTTGTGTTTGAACAGATGCAGTATGCGGGTGTTGTTCCGAATCAGGTCACGATGGTTAATGCTTTGGCTGCTTGTGCTAGCTCTGGTGCTATTGAAATGGGGATTTGGATTGATGATATGATACGGAGGAATGGGTTGGAATTGGATGTGATTTTGGGGACGGTGTTGATTGATATGTATGTGAAGTGTGGGAGAGTGGAAGAGGGGTTGAGGGTTTTCGGTAATATGAAGGAAAGAAATGTGTTTACTTGGAATACTGTTATTAGAGGGCTTGCTTTGGCTAAGAGTGGTGATGAGGCTATTTTGTGGTTTAATAGGATGGAGCTGGATGGAGTTAGAGCTGATGAAGTGACTTTGGTTGCGGTACTTTCTGCGTGCAGTCATTCGGGTTTGGTGGATAAGGGTCGATTGATTTTTAATATGTTGGTTGATGGAAAGTATGGATTTTGTCCTAATGTCAAACACTATGCTTGTATGGTTGATATCTTGGCACGTGGTGGTCGATTACGAGAGGCTTTTGAGATCATGAGATGTATGCCTTTTGAGCCAACGAAAGCCATGTGGGGATCATTGTTGGCTTGTTCCAAATCTCAAGGTGACTTGGAGTTCAGTGAGTTTGCAGCTAGAAAACTGGTTGAATTGGAGCCAGGTAACGCTGCCTATTATGTCCAGTTGTCGAATCTGTATGCAGAGGCAGGAAAATGGGGCGATTTTGAGAGAGTTAGGGGAATGATGAAAGAGAGGGAACTGACTAAAGACTTGGGGTGTAGTTCCGTGGAGGTTGAACGCCAAAGATCTGCTAGTGAGCTCTTGGCATAG 1401 0.4118 MNDMSFLADRVVTLLKGFCRSQIQLKQIQSQIILHNLQSNTTIALHLINASQSHNLLNSLLPLFTILTPKPHVFIFNTLIRAFSHSHIPHTPLFLYTHMQKNSIFPNNFTFPFLFKSLSDSNNFIQSQCVYTHVIKLGHLNDLYVNNSLLDVYASCGYVSLCRQLFDEMSHRDVVSWTVLIMGYRFCGKYDDALLVFEQMQYAGVVPNQVTMVNALAACASSGAIEMGIWIDDMIRRNGLELDVILGTVLIDMYVKCGRVEEGLRVFGNMKERNVFTWNTVIRGLALAKSGDEAILWFNRMELDGVRADEVTLVAVLSACSHSGLVDKGRLIFNMLVDGKYGFCPNVKHYACMVDILARGGRLREAFEIMRCMPFEPTKAMWGSLLACSKSQGDLEFSEFAARKLVELEPGNAAYYVQLSNLYAEAGKWGDFERVRGMMKERELTKDLGCSSVEVERQRSASELLA* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0541 466 Gene3D Tetratricopeptide repeat domain 91 231 IPR011990 GO:0005515
Tpr6g0541 466 Gene3D Tetratricopeptide repeat domain 232 339 IPR011990 GO:0005515
Tpr6g0541 466 Gene3D Tetratricopeptide repeat domain 340 463 IPR011990 GO:0005515
Tpr6g0541 466 PANTHER - 4 462 - -
Tpr6g0541 466 Pfam PPR repeat family 172 219 IPR002885 -
Tpr6g0541 466 TIGRFAM PPR: pentatricopeptide repeat domain 248 275 IPR002885 -
Tpr6g0541 466 TIGRFAM PPR: pentatricopeptide repeat domain 175 208 IPR002885 -
Tpr6g0541 466 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Tpr6g0541 466 TIGRFAM PPR: pentatricopeptide repeat domain 147 175 IPR002885 -
Tpr6g0541 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Tpr6g0541 466 Pfam E motif 394 454 IPR046848 -
Tpr6g0541 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 273 IPR002885 -
Tpr6g0541 466 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 462 - -
Tpr6g0541 466 Pfam PPR repeat 350 373 IPR002885 -
Tpr6g0541 466 Pfam PPR repeat 276 306 IPR002885 -
Tpr6g0541 466 Pfam PPR repeat 248 275 IPR002885 -
Tpr6g0541 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0541 Tpr-Chr6 4381731 4383604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0541 95 455 Glycoside Hydrolase AT3G49170 33.702 3.86e-63 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0541 - - lja:Lj0g3v0239469.1 697.197