Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0539 ATGGCTGCAGCCAAGCCACCATCTGATCAACAAGTTCCTCCTGGATCAGAAGAAACTCTCAAGTATCAGACATGGGTTTTGAAAGTCTTGATCCATTGTGATGGCTGCACAAAAAGAGTCAAGAAAATTCTTCAAGGAATTGAAGGGGTTTACAAAACAGAAATTGATTCTCAGGCGCACAAGGTTACCGTTACGGGTAATGTTGCCGCCGAGACTCTCATCAAGAAGCTTTCAAGATCAGGGAAATCAGTAGAACTTTGGCCAGAAAAGCCTCCTGAGAAGAAAGATAATAAGAAAGACAAAAAGTCTTCAAAATCAAAAGATGAAACTGAAAATAGTACTAATAAGGAGAAAGAAGGCCAAAAAAATACTGAACAAGTTGGTGAAATTAGTCATGATCATCAAGGTTGTATAGATGATGATGGAGGTGATGATGGTGAAGAAGATTCAGATCAAGATCATAAAGAAGGTAATAATAATAATAATGGTGATAGTAATAAAAGTGAAGGTGGTGCTAAAAAGAAGAAAAAAAAGAAAAAGAAGAACAAAAGTGGCTCTGTTACTCCTAATAATGGAGGAGGAGAAAAAGTGATTATTGGTACAGAAACAATTGATGCACCAGTTGCAATTCCCAAGGAAATGATTATGCCACCACCACCTCAAGTACTTCAGCAGCATGGTACTTATAACCCATATCAACCACATATGTACTATTCACACCCTCCTCTCACTCCAGCACCACCACCATATGGTTTAAGTTATAACACATCATATCCTGTTTCTACCACTTCTTCTTATTATGTTGGTGCTCCTGTCATGCCTATGCATGCTAATTATGCTAGACTCCCTCCACCTCCTCCACCATCTCATCCAACCAATAACTATGGTTATCATAATGATCATGAAGAATATGAAGGTGGATATTGCTCCATTATGTGA 939 0.3834 MAAAKPPSDQQVPPGSEETLKYQTWVLKVLIHCDGCTKRVKKILQGIEGVYKTEIDSQAHKVTVTGNVAAETLIKKLSRSGKSVELWPEKPPEKKDNKKDKKSSKSKDETENSTNKEKEGQKNTEQVGEISHDHQGCIDDDGGDDGEEDSDQDHKEGNNNNNGDSNKSEGGAKKKKKKKKKNKSGSVTPNNGGGEKVIIGTETIDAPVAIPKEMIMPPPPQVLQQHGTYNPYQPHMYYSHPPLTPAPPPYGLSYNTSYPVSTTSSYYVGAPVMPMHANYARLPPPPPPSHPTNNYGYHNDHEEYEGGYCSIM* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0539 312 SUPERFAMILY HMA, heavy metal-associated domain 22 88 IPR036163 GO:0046872
Tpr6g0539 312 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 17 312 - -
Tpr6g0539 312 MobiDBLite consensus disorder prediction 81 196 - -
Tpr6g0539 312 Pfam Heavy-metal-associated domain 31 82 IPR006121 GO:0046872
Tpr6g0539 312 Gene3D - 20 86 - -
Tpr6g0539 312 ProSiteProfiles Heavy-metal-associated domain profile. 31 86 IPR006121 GO:0046872
Tpr6g0539 312 MobiDBLite consensus disorder prediction 82 139 - -
Tpr6g0539 312 CDD HMA 31 85 IPR006121 GO:0046872
Tpr6g0539 312 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 17 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0539 Tpr-Chr6 4368527 4370705 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0539 - - gmx:100791626 234.572