Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0537 ATGGTGGCAATGGCAGTGGTTGCATCACCACAATTCCTGTGCTTCTCATCAGAATCAAATTTGAGAATCACAACAACAATAACAAGGCCATGTCTTCCTCTTCCTCATTTCAACTCCATTCTTCTACGCAATAACAAGATTTATTTTCCACTCATTTCATGCTCTTCATCATCACAGACACCAGAAGCTCAAACTCAAACTGCTGAATCTTGTGTCAATTTGGGTCTTCAGCTCTTTTCCAAAGGAAAGGTTAAAGATGCTTTGACTCAGTTTGAAACAGCACTTTCTTTGAATCCCAATCCTGTAGAGGCTCAAGCTGCGTTCTATAACAAAGCTTGCTGTCATGCATATAGAGGAGAAGGAAAGAAAGCTGCTGATTCTCTCCGCACTGCTTTGAGGGAATACAACCTAAAATTTGGTACAATTCTCAACGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCCAGGCTGGGTGGGGAAGATGTTGGCTCCAGTTTCCGAAGAGATCTAAAACTTATCAGTGAAGTTCAAGCACCGTTTCGTGGGATTAGGAGATTCTTTTCCGTAGCATTTACAGCAGCTGCAGGAATATCATTGTTTTTTAATATACCGAGGATATTGCGTGCAATTCAAGGTGGTGATGGTGCTCCTGATATTTTGGAAACTGCTGGCAATGCTGCCGTTAACATTGGAGGTATTGTTGTTTTTGTGGCACTATTCTTATGGGACAATAAAAAAGAGGAGGAACAGCTTGCGCAAATATCCCGAAATGAGACACTATCAAGGTTGCCTTTGCGCCTGTCAACTAATCGCATAGTTGAACTCGTGCAGCTAAGGGACATAGTTAGGCCAGTTATATTAGCTGGGAAAAAAGAAACGGTGACTTTAGCTATGCGTAAAGCAGAGAGATTTCGCACTGATCTAGTTAGACGCGGTGTTTTGTTAGTTCCTGTCATCTTCGGAGAAGGTAGAAAACCCAAAATTGAAAAGAAAGGTTTTGGCCCTAAACCAAAGGTTGCTGAGCCTCTTCCATCCATTGGGGAAGATTTTGAGAAGCGAACACAATCCGTAACTGCACAATCAAAATTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGTTGTATCACCAGCTGAATGGGAACGGTGGATAAGAGATCAGCAGGAGTCTGAAGGAGTTCCAGTTGGTGAAGATGTGTACATAATACTGCGCTTAGATGGGCGAGTTCGAAGGTCTGGTAAAGGTGTACCTGACTGGGAGCAAATTGCGAAGGAGCTGCCGCCAATCGATGCAATTTTAAGCAAGCTGGAAAGATGA 1341 0.431 MVAMAVVASPQFLCFSSESNLRITTTITRPCLPLPHFNSILLRNNKIYFPLISCSSSSQTPEAQTQTAESCVNLGLQLFSKGKVKDALTQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAADSLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGSSFRRDLKLISEVQAPFRGIRRFFSVAFTAAAGISLFFNIPRILRAIQGGDGAPDILETAGNAAVNIGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDIVRPVILAGKKETVTLAMRKAERFRTDLVRRGVLLVPVIFGEGRKPKIEKKGFGPKPKVAEPLPSIGEDFEKRTQSVTAQSKLKAEVRFKAEVVSPAEWERWIRDQQESEGVPVGEDVYIILRLDGRVRRSGKGVPDWEQIAKELPPIDAILSKLER* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0537 446 Gene3D Tetratricopeptide repeat domain 54 153 IPR011990 GO:0005515
Tpr6g0537 446 SMART tpr_5 68 101 IPR019734 GO:0005515
Tpr6g0537 446 SMART tpr_5 105 138 IPR019734 GO:0005515
Tpr6g0537 446 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 49 446 - -
Tpr6g0537 446 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 49 446 - -
Tpr6g0537 446 ProSiteProfiles TPR repeat profile. 68 101 IPR019734 GO:0005515
Tpr6g0537 446 Pfam Low psii accumulation1 / Rep27 176 253 IPR021883 -
Tpr6g0537 446 SUPERFAMILY TPR-like 63 134 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0537 - - gmx:100793204 713.375