Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0531 ATGCTTCCTCTTTCACTTCTTAAGACTGCACAAGGCCACCCTATGTTGGTGGAGCTGAAAAATGGAGAGACTTATAATGGTCACTTGGTTAATTGTGATACATGGATGAACATTCATCTCCGGGAAGTTATTTGTACCTCTAAAGATGGAGACAGATTTTGGCGGATGCCCGAGTGTTATATACGAGGCAATACGATTAAGTACCTTCGTGTTCCTGATGAGGTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGCACAGATCGCAAGCCACCTGGCGTGGGACGTGGTAGGGGAAGAGGGGGAGGTAGGGAGGAAGGTGCTGGTTCTGGTGCTGGTGGACGCCAACCAAAAGGTATTGGGCGTGGTTTTGATGATGGTGGTGCTAGAGGAGCTGGAGGCCGAGGTAGGGGTAGCCAAGGTGGAAAGCCTGGAGGAAGCAGAGGTGCTGGACGAGGTAGAGGTTGA 468 0.5 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGGGREEGAGSGAGGRQPKGIGRGFDDGGARGAGGRGRGSQGGKPGGSRGAGRGRG* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0531 155 MobiDBLite consensus disorder prediction 79 103 - -
Tpr6g0531 155 Gene3D - 1 83 - -
Tpr6g0531 155 PANTHER SM-LIKE PROTEIN LSM4 1 144 - -
Tpr6g0531 155 Pfam LSM domain 6 70 IPR001163 -
Tpr6g0531 155 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Tpr6g0531 155 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 144 IPR027141 GO:0006396
Tpr6g0531 155 SUPERFAMILY Sm-like ribonucleoproteins 3 122 IPR010920 -
Tpr6g0531 155 MobiDBLite consensus disorder prediction 79 155 - -
Tpr6g0531 155 SMART Sm3 5 71 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0531 Tpr-Chr6 4331277 4334507 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0531 K12623 - gmx:100500134 207.608