Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0501 ATGGCATCTGCACCTTCCATGTCAGTTTCTTTGGAGTGTGTGAACGTATGCAATTTTTGGAGAGGGGATGGAAATGGAAGATATGATTGTAATTTTCTATCGTGTGCGTCTAAAGCTCCTAGGGTTCTTACTGGTTTTCTTGCCACCACTGCTCATCCTCATTACTTGCTTAATGCTCCAAATGGAAGAAGGAACCGGTATAATTTTGCATGTGAAGCTTTTAGTATAGTAGGTTCATATTCTGATGATGAAGCACTTGGCATAACACTTCGCCATGGATTCTCTAGATCTATCTTTTCTAGATTTGCTCCTAGACGTTGGCAATTGTCTTGTTCTTCGGCTTTTTCCTCTGATATTGACAGCGAGTTTTCTCCTGGAAGTTTGTGGGAGGATCTTAAGCCCGTGATCTCGTATCTTCCTCCGAAAGAACTGGAGTTGGTCCATAATGCTTTTATGTTGGCTTTTAAAGCTCATGATGGTCAAAAAAGACGCAGCGGTGAACCCTTTATCATTCATCCGGTTGAGGTTGCACGTATTCTTGGAGAGCTTGAACTTGATTGGGAGTCAATTGCTGCTGGATTGCTCCATGACACGGTGGAAGATACAGATGTTGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGCCACATTGTGGAAGGAGAGACTAAGGTGTCAAAGCTGGGAAAGTTGAAGTACAAGAATCAAAATGATTCTGTTCAAGATGTGAAAGCAGAGGACCTTCGGCAAATGTTTCTAGCTATGACAGAGGAGGTTCGTGTTATTATCGTCAAATTAGCAGACAGGTTACATAACATGCGCACTCTATCACATATGCCTCCACATAAACAGACTAGCATTGCAGTGGAGACATTACAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAACCTATCATTTATGTACACAAATGCTGAAGATTATGCGAAGGTGAAGAGAAGAGTTGCCGACCTGTTCAAAGAACACGAGAAAGATCTTTTAGAGGCAAACAAAACATTGTTAAAGAAAATCCAAGATGATCAATTCTTAGACCTTTTGGCTGTTAAAACGGAAGTTCGTGCTGTGTGTAAAGAGCCTTACAGTGTCTATAAAGCTGTGCTCAAGTCTAAAAGTTTGATCAATGAGATTAACCAAATTGCACAGCTTCGTGTCATTATTAAACCAAAGCCGTGCATTGGGGTTGGGCCTTTATGCAGTCCACAGCTGATTTGCTATCATGTTCTGGGGTTGATCCATGGAGTCTGGACCCCTATTCCTAGATCTGTGAAGGATTACATTGCAACCCCTAAACCTAATGGGTACAAGAGTCTTCATAGCACTGTGATTCCATTTTTGTATGAGAGTATGTTCAGGCTTGAAATCCAGATTAGAACAGAAGAAATGGATTTGATAGCAGAGAGGGGCATTGCAGCTCATTATAGTGGGAAACAACTTGTTACTGACTTGGTTGGAAGTGCAGTGCCCAGTGGTAAAAGCTCAAGGGGGAAGCCAGTGTGTCTTAGCAATGCCAACATTGCACTCAGAATTGGCTGGCTCAATGCTATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTGTTACAAGAGATCTTTTGGGCAGTCGTGTCTTTGTATTTACACCCAGGGGAGAGATTAAGAATCTTCCTCAAGGTGCTACAGTAATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAGATGGTAGCTGCAAAGGTCAATGGCAATCTTGTTTCTCCTGCACGCGTGCTTGCAAATGCAGAAGTTGTGGAGATAATAACATATAATGCACTTTCCAGCAAATCAGCTTTTCAAAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGGAGTGCGAGACACAAAATAATGAAGTTTCTGAAGGAGCAAGCTGCACTTTCTGCTGCTGATATCACTACAGAAGCAGTTAACGACTTTGTCAGTGATTCTGACGGGGATAGTGACTCTGAAAAACTGTCAAATGGTTCCAAACATAAGATGGGGAGAATATTATTGAACGGTGTGGAAATATCAACTCCAGAAAGAAGTGAGACTGTCCTCCAGAGTAAGAATGGAAGTGCTTGGACTCCCAAGGTCAATGGAAAACACAATAAGCATGTGCATCATGTAAATTCAAAGGGCAAAGGGGACATGATGCTGCAGGGAAACCATGTTGCCAATATGATTCAAGTTAACAATCCAAAATATAAAGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCTCATAAGATTGCCTCGTGGCACAATATAGAAGGGCATTCCATCCAATGGTTATCTGTAGTATGCATAGACCGAAGAGGCATGATGGGTGAGGTCACTACAGCATTGGCCACTGCAGACATAACCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGTTATTTCAAATAGATGGAAATTTAGAAAATTTGGTGAATGCTTGCTCTAGAGTAGATCAAATACTGGGTGTTTTGGGATGGTCTACTGGCTGCAGCTGGCCAAGCTTAATGGAAAACCATTGCGTTCTTGAATGTTAG 2640 0.4189 MASAPSMSVSLECVNVCNFWRGDGNGRYDCNFLSCASKAPRVLTGFLATTAHPHYLLNAPNGRRNRYNFACEAFSIVGSYSDDEALGITLRHGFSRSIFSRFAPRRWQLSCSSAFSSDIDSEFSPGSLWEDLKPVISYLPPKELELVHNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTDVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNQNDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAVETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLFKEHEKDLLEANKTLLKKIQDDQFLDLLAVKTEVRAVCKEPYSVYKAVLKSKSLINEINQIAQLRVIIKPKPCIGVGPLCSPQLICYHVLGLIHGVWTPIPRSVKDYIATPKPNGYKSLHSTVIPFLYESMFRLEIQIRTEEMDLIAERGIAAHYSGKQLVTDLVGSAVPSGKSSRGKPVCLSNANIALRIGWLNAIREWQEEFVGNMSSREFVDTVTRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPARVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLKEQAALSAADITTEAVNDFVSDSDGDSDSEKLSNGSKHKMGRILLNGVEISTPERSETVLQSKNGSAWTPKVNGKHNKHVHHVNSKGKGDMMLQGNHVANMIQVNNPKYKEVLPGLESWQAHKIASWHNIEGHSIQWLSVVCIDRRGMMGEVTTALATADITICSCVAEIDGGRGMAVMLFQIDGNLENLVNACSRVDQILGVLGWSTGCSWPSLMENHCVLEC* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0501 879 CDD NT_Rel-Spo_like 366 486 IPR007685 GO:0015969
Tpr6g0501 879 Pfam TGS domain 563 622 IPR004095 -
Tpr6g0501 879 CDD HDc 167 298 IPR003607 -
Tpr6g0501 879 Gene3D - 792 859 - -
Tpr6g0501 879 Pfam Sporulation protein Cse60 336 376 IPR020296 -
Tpr6g0501 879 Gene3D Beta Polymerase, domain 2 324 478 IPR043519 -
Tpr6g0501 879 Pfam HD domain 150 307 - -
Tpr6g0501 879 SUPERFAMILY Nucleotidyltransferase 327 498 IPR043519 -
Tpr6g0501 879 SMART RelA_SpoT_2 376 498 IPR007685 GO:0015969
Tpr6g0501 879 SMART hd_13 165 285 IPR003607 -
Tpr6g0501 879 ProSiteProfiles TGS domain profile. 559 622 IPR004095 -
Tpr6g0501 879 Pfam Region found in RelA / SpoT proteins 376 493 IPR007685 GO:0015969
Tpr6g0501 879 ProSiteProfiles HD domain profile. 169 276 IPR006674 -
Tpr6g0501 879 ProSiteProfiles ACT domain profile. 792 867 IPR002912 -
Tpr6g0501 879 SUPERFAMILY HD-domain/PDEase-like 133 322 - -
Tpr6g0501 879 CDD TGS_RSH 564 622 IPR033655 -
Tpr6g0501 879 Gene3D - 556 631 IPR012675 -
Tpr6g0501 879 SUPERFAMILY ACT-like 792 858 IPR045865 -
Tpr6g0501 879 SUPERFAMILY TGS-like 550 622 IPR012676 -
Tpr6g0501 879 Gene3D Hypothetical protein af1432 129 322 - -
Tpr6g0501 879 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0501 Tpr-Chr6 4117043 4128250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0501 179 500 EF-hand Containing Proteins AT3G17470 30.606 3.83e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0501 K00951 - gmx:100786637 1458.35