Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0470 ATGTCTCGTCGCAATTCCAATGGTCGATCACCACTCGTTAATCCTCAGCGTCAAATCACTTCATTCTTCACCAAAACTCCTTCCCCTTCTCCCTCTCTCACCAAAACCAATCCCAAATCAAACAACCCTAATCCCATTCCTAACCCTAAATCTAACCCTAACCCTAGTCCTACACTTACTACACCTTCACCTCTCAATCCCCAAAAACCACACAAGCCTCGTCTCGTCATCGATGCTTCTCCTACCACAACAACACCAACACCACCATCCTCTTCGCATTCTCATTTCATCGGTAAAAGGATCAAGGTTTATTGGCCTTTAGACGATGCTTGGTACGAAGGTGTTGTCAAATCATTTGATAGTGTTACTTCCAAGCATCGGATTCGTTACGATGACGATGAAGAGGAATCAATCGATATTTCCAAGGAGAAGATTGAGTGGCTTCAGGATAATTCTTCTAAGAAGCTTAAACGGCTGCGGCGTGGTTCTTCGCCTATTAGGAAGATGGTGATTGAGGATAATGAGGTAGAAGAAAGTCCCAAAGAGGAAAAAGAAGAACTTGATGATGATGGTGATAATGATGATTCGGCTGATGAAGATTGGGGGAAAAATGCTGTATTGGAGGATGTTGCGGATGATGAAGAAGATATGGAGCTGGAGGAAGAAAATGAGGTTGTGGAGAACTCTAATGGAAAGAGTAGGGGCAAGGTTGAGCCCAAAAAGAGGAAGCTCGGGGGAGCAGCGAAACCGGAACCTATGAAAAAGAGCAAGAGTGGAAAGGAAGTTAATGGGGTAGTAGCTGTTAAGCTCTCACCATTGGAGGTTAAAAAGATATCTGATGACTTAGTTAATGCTGCAACTGGTGATGCTTCTGAAAGATTTGCGCTCCGTGAAGCTCAAAAGTTTCGCTTTCTGGGAAAAGATCGCAGGGACGCCAAACGAAGGCGTCCAGGAGATGAAAATTATGACTCAAGAACTCTCTACTTGCCTCCAGATTTTGTGAGGGGTTTGTCAGATGGCCAGAGACAATGGTGGGACTTCAAGTCAAAACATATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAAATGGATGCACATGTAGGAGCAAAAGAGCTTGACTTGCAGTATATGAAGGGAGAGCAACCTCATTGTGGATTTCCAGAGAAGAATTTCTCAATGAATGTAGAGAAACTGGCTAGAAAGGGTTATCGAGTTCTTGTTGTAGAGCAAACTGAAACACCCGATCAGCTGGAGCTTCGTCGCAAGGAGAACGGATCTAAAGATAAGGTTGTGAGACGGGAAATATGTGCAGTGGTTTCAAAAGGCACAATAACAGACGGGGAGTTTATGTCAACAAATCCCGAAGCTGCATATTTAATGGCACTGACTGAGCACCATGAGAACCATCCAAATGAAATGTCAGAGCGCATCTACGGTGTTTGTGTAGTTGATGTTTCCACAAGCAGAGTCATTCTTGGGCAGTTCAACGATGACTCAGAGTGCAGTGCATTGTGCTCTATCTTGTCTGAGGTCAGGCCAGTTGAAATTGTGAAACCTGCTAAACTACTGAGTGCTGAAACAGAAAGGGTACTGCTGAAACACACCAGAAACCCTCTAGTGAATGAATTAATTCCAACTGTAGAGTTCTGGGATGCTGATAAAACTTTGGATCAATTGAAGAGAATTTATGGGCACAATAATGATGTTAGTGTTCAAGATGGAGAGTTAGATTGTCTGCCAGATGTTTTACTGGAGCTGGTGAAAACAGGTCATGACAGCAGAAGTGCACTCTCAGCACTTGGTGGTGCTCTCTATTATTTGAAACAGGCTTTCCTAGATGAGCAGTTGCTTAGATTTGCGCAGTTTGAGTTGCTTCCATGTTCTGTTTTCAGTGGCCTTGCTTCAAAACCATACATGGTTCTTGATGCAGTAGCCCTAGAGAATCTTGAGATTTTTGAGAACAGCAGAAATGGAGAGTCTTCTGGCACGCTCTATGCTCAATTAAACCAATGTGTTACGGCGTTTGGGAAGAGATTGCTAAAGTCATGGCTTGCAAGACCGTTATGTCATGTGGAGTCAATTAAGGAACGCCAGGAAGCTGTTGCATGTTTGAAGGGAGAAAATCTACCTCACGCCCTAGAATTTCGAAACACATTATCGAAGTTACCTGACATGGAGCGGTTGCTTGCACGGGTGTTCTCTTCTAGGGATGCTAGTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATTCATCAAAGAAACAGCTGCAAGAGTTTATTTCAGCCCTGCGCGGTCTTGAACTAATGGCACAAGCTTGCTTGTCACTCGGTGTCATTTTGAACAATGTCAAATCAACACAACTTAGTCAACTTTTAACACCTGGTAAAGGTCTTCCTGATGTAAGTTCGGATCTGAATCATTTCAAGGATGCTTTTGATTGGGTAGAAGCCAATAACTCTGGCCGTATAGTACCTCATGAAGGAGTTGACATAGAGTATGATTCAGCTTGTAAGGCAGTTAAAGAGATTGAGTCCAGTTTATTAAAGCACCTCAAGGAACAAAAGAAATTACTTGGATGCACATCAATCTCTTATGTTCATATTGGAAAGGACACATACCTATTGGAAGTGCCTGAAAATTTATCTGAGAATATTCCTCGGGATTATGAGAGGCGTTCATCCAAGAAAGGCGTCTGTAGGTATTGGACTCCAGATATTAAAATATTTTTGAAAGAGCTCTCCCATGCTGAATCTGAAAAGGAGACCTTATTGAAAAGTACATTGCAGAGAATGATTGTGCGTTTTTGTGAGCATCACACTCAGTGGAAGCAGTTGGTGTCTGCAACTTCTGAGTTGGATGTTTTGATCAATTTAGCTATTGTTAGTGATTACTATGAAGGACCAACATGCAGACCGAGTTTTGCTGGGACATTATGTACAAATGAAGCTCCATACATCTATGCTAAAAGTCTGGGACACCCAGTTCTTAGGAGTGATTCCTTGGGAAAGGCTGCCTTTGTACCTAATGACATAACCATAGGTGGTCCAGATCAGGCCTCCTTTATTCTTCTTACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTGATTTTGGCTCAGGTAGGGGCTGATGTTCCGGCAGAAAGTTTTGAATTGTCTCCCGTGGACCGAATTTTTGTTCGGATGGGTGCCAGAGATAATATCATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCATCAGCAACTCGTAATTCATTGGTGGCTCTGGATGAGCTTGGGCGTGGGACCTCAACGTCGGACGGACAAGCCATTGCGGAATCAGTACTAGAACATCTTGTACATAAGGTGCAGTGTCGTGGATTGTTTTCTACACACTATCATCGATTAGCTATAGATTATCTCAAAGATCCCAAGGTCTGTCTCTCTCACATGGCATGCCAAGTTGGTAGTGGCAGTGAAGGTTTGGACGAAGTCACCTTTCTTTACAGGCTGACTGCTGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGATTAGCTGGACTACCGACTTCTGTGCTTCAGAAGGCTGCTGCTAAGTCCAGAGAATTTGAGGCCACTTACGGTAAATACAGAAATGCGTTACCTGAAACAAACTCTCTGAATCAAAGTTGGGTCGATGAGATAACAGCTATTGTACAAAAATTGAACAATGCTGCTACAAATTTGAGTCGGGAGGAGACTGTTTCTGATGGTTCCCTAATGGAGCTTCAATGTAAAGCAAGAAAACTTCTAGAACAATGTTAA 3855 0.4304 MSRRNSNGRSPLVNPQRQITSFFTKTPSPSPSLTKTNPKSNNPNPIPNPKSNPNPSPTLTTPSPLNPQKPHKPRLVIDASPTTTTPTPPSSSHSHFIGKRIKVYWPLDDAWYEGVVKSFDSVTSKHRIRYDDDEEESIDISKEKIEWLQDNSSKKLKRLRRGSSPIRKMVIEDNEVEESPKEEKEELDDDGDNDDSADEDWGKNAVLEDVADDEEDMELEEENEVVENSNGKSRGKVEPKKRKLGGAAKPEPMKKSKSGKEVNGVVAVKLSPLEVKKISDDLVNAATGDASERFALREAQKFRFLGKDRRDAKRRRPGDENYDSRTLYLPPDFVRGLSDGQRQWWDFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPDQLELRRKENGSKDKVVRREICAVVSKGTITDGEFMSTNPEAAYLMALTEHHENHPNEMSERIYGVCVVDVSTSRVILGQFNDDSECSALCSILSEVRPVEIVKPAKLLSAETERVLLKHTRNPLVNELIPTVEFWDADKTLDQLKRIYGHNNDVSVQDGELDCLPDVLLELVKTGHDSRSALSALGGALYYLKQAFLDEQLLRFAQFELLPCSVFSGLASKPYMVLDAVALENLEIFENSRNGESSGTLYAQLNQCVTAFGKRLLKSWLARPLCHVESIKERQEAVACLKGENLPHALEFRNTLSKLPDMERLLARVFSSRDASGRNANKVVLYEDSSKKQLQEFISALRGLELMAQACLSLGVILNNVKSTQLSQLLTPGKGLPDVSSDLNHFKDAFDWVEANNSGRIVPHEGVDIEYDSACKAVKEIESSLLKHLKEQKKLLGCTSISYVHIGKDTYLLEVPENLSENIPRDYERRSSKKGVCRYWTPDIKIFLKELSHAESEKETLLKSTLQRMIVRFCEHHTQWKQLVSATSELDVLINLAIVSDYYEGPTCRPSFAGTLCTNEAPYIYAKSLGHPVLRSDSLGKAAFVPNDITIGGPDQASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFELSPVDRIFVRMGARDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHLVHKVQCRGLFSTHYHRLAIDYLKDPKVCLSHMACQVGSGSEGLDEVTFLYRLTAGACPKSYGVNVARLAGLPTSVLQKAAAKSREFEATYGKYRNALPETNSLNQSWVDEITAIVQKLNNAATNLSREETVSDGSLMELQCKARKLLEQC* 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0470 1284 MobiDBLite consensus disorder prediction 168 260 - -
Tpr6g0470 1284 SUPERFAMILY Tudor/PWWP/MBT 95 138 - -
Tpr6g0470 1284 Gene3D DNA repair protein MutS, domain I 296 457 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 SUPERFAMILY DNA repair protein MutS, domain III 648 972 IPR036187 -
Tpr6g0470 1284 SMART DNAend 665 1006 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 PANTHER DNA MISMATCH REPAIR PROTEIN MSH6 304 1258 - -
Tpr6g0470 1284 MobiDBLite consensus disorder prediction 78 94 - -
Tpr6g0470 1284 Pfam MutS domain I 341 453 IPR007695 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 MobiDBLite consensus disorder prediction 1 41 - -
Tpr6g0470 1284 Gene3D - 811 942 - -
Tpr6g0470 1284 Pfam MutS domain III 651 966 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 304 1258 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Tpr6g0470 1284 MobiDBLite consensus disorder prediction 1 95 - -
Tpr6g0470 1284 PIRSF Msh6 2 1268 IPR017261 GO:0006298|GO:0030983
Tpr6g0470 1284 Pfam MutS family domain IV 835 926 IPR007861 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 MobiDBLite consensus disorder prediction 178 197 - -
Tpr6g0470 1284 Gene3D - 645 966 - -
Tpr6g0470 1284 SUPERFAMILY DNA repair protein MutS, domain I 326 449 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 MobiDBLite consensus disorder prediction 42 69 - -
Tpr6g0470 1284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 989 1221 IPR027417 -
Tpr6g0470 1284 MobiDBLite consensus disorder prediction 225 258 - -
Tpr6g0470 1284 SMART mutATP5 1026 1218 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 SUPERFAMILY DNA repair protein MutS, domain II 458 660 IPR036678 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 MobiDBLite consensus disorder prediction 209 224 - -
Tpr6g0470 1284 Gene3D - 90 146 - -
Tpr6g0470 1284 Coils Coil 1242 1262 - -
Tpr6g0470 1284 Pfam MutS domain II 464 617 IPR007860 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 Gene3D MutS, connector domain 462 642 IPR036678 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 Pfam MutS domain V 1030 1220 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tpr6g0470 1284 Gene3D - 977 1256 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0470 Tpr-Chr6 3818550 3826815 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0470 K08737 - gmx:100811104 1889