Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0411 ATGAGAATTGATGGTAGATTTCTCAATTTCAGTTATCTTTTTCGGTTGCGGAATCACTTCCAATCAAAGTCCGAACTTCCACTTCGAAATTTCCTGCTTCGTTCTTACTCTTCCGAAGTGCAAACTGAAATTTCACCGGATCTGTTAAACATAATGGAGCAAAGATTTTCTGCTATTAAGCATAGGGCTACATGTCTTGACAATCTTATGAATCAGCCAGAAGCGACACCGGCAGAGTATGCAAGAGCTAACAAAGAGCTTAGAAAGCTAAGTGGTTCTGTGCAACTTATTAATGAGTTGAAGGCCAAACAGAAGGAAATTGATGGCCTGAAGTCACTAATAACTGAATGTTCTGAAGACAAAGACATGCTTAATATGGCAACAGAGGAAATGGGCCAGGCCATAGAGGAAGAAAGAAAAGTGCAGAATTTGCTGTTGAAGTCATTACTTCCTAAGGATGATGCTGATGAAAGAGATTGCATTTTGGAGGTACGAGCAGGGACTGGTGGGGAGGAAGCTTCCTTGTTTGCAATGAATATCTTTAAGATGTACGAGAAGTATGCTCACAACAAAGGTTGGAAGTTTGAAGTGGTAGATATAGCTCAATCTGATATGAAGGGATTCAAGGAGGCTAGTGCAGCAATTGTTGGAGTTGGTGTTTTTGGTAAACTAAAATTTGAGAGTGGAATTCATAGAGTACAGAGAGTTCCTGTGACTGAAAAACTGGGACGTGTTCATACCAGTGCTGTTTCTGTTGCAATTCTTCCTCAGGCTGATGAGGTCGATGTCCAGTTAAAGAATGAAGAGTTGAGAGTTGATACGTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATACAACTAACAGTGCTGTTAGAATAACTCACCTTCCAACTGGGATCGTGGTTGCTATACAAGATGAACGTTCTCAGCATATGAATAAAGCCAAAGCTCTCAAGGTACTGTGTGCAAAGCTATATGAAATGGAAAGGCTCAGACTTCAAAGTAGTCGATCAAAGCTTCGATCAGAGCAGATTGGTAGTGGGGACAGATCTGAACGCATCCGAACATACAATTTTCCTCAAGGCCGTGTAACTGATCATAGAGTTGGTATCACATATCACAACATAGAAGATGTGATGCAAGGAGAGAATCTTGATGTCTTCATTGATGCTCTTCTTCTGAAAGAAGAAATGGATGCAATTGCAACTTTTAGTTCGTCTACATAA 1230 0.4065 MRIDGRFLNFSYLFRLRNHFQSKSELPLRNFLLRSYSSEVQTEISPDLLNIMEQRFSAIKHRATCLDNLMNQPEATPAEYARANKELRKLSGSVQLINELKAKQKEIDGLKSLITECSEDKDMLNMATEEMGQAIEEERKVQNLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAMNIFKMYEKYAHNKGWKFEVVDIAQSDMKGFKEASAAIVGVGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADEVDVQLKNEELRVDTYRSGGSGGQHANTTNSAVRITHLPTGIVVAIQDERSQHMNKAKALKVLCAKLYEMERLRLQSSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHNIEDVMQGENLDVFIDALLLKEEMDAIATFSSST* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0411 409 Gene3D - 258 353 - -
Tpr6g0411 409 PANTHER LD18447P 34 407 - -
Tpr6g0411 409 Gene3D - 47 154 - -
Tpr6g0411 409 PANTHER LD18447P 34 407 - -
Tpr6g0411 409 SMART PCRF_a_2 112 227 IPR005139 GO:0006415
Tpr6g0411 409 Hamap Peptide chain release factor 1 [prfA]. 52 406 IPR004373 GO:0006415|GO:0016149
Tpr6g0411 409 Gene3D - 162 390 - -
Tpr6g0411 409 Pfam PCRF domain 60 252 IPR005139 GO:0006415
Tpr6g0411 409 Pfam RF-1 domain 259 369 IPR000352 GO:0003747|GO:0006415
Tpr6g0411 409 Coils Coil 93 120 - -
Tpr6g0411 409 SUPERFAMILY Release factor 66 396 IPR045853 -
Tpr6g0411 409 TIGRFAM prfA: peptide chain release factor 1 54 406 IPR004373 GO:0006415|GO:0016149
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0411 Tpr-Chr6 3377745 3381349 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0411 K02835 - gmx:100800412 666.766