Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0406 ATGGCTAATAACCCAACACAACCTAATGTTGGGTTCATCCCTTCAAACCCAGAACAAGAACAAGATAGACAAACTCCAATTCATCCTCCTCCACCTCCTCCAACTTTTGCAGCACCACCTAGATTTCCTCCACCAATTTTACATTTACAGAAAGATCAAGGTTCTATTCATTCTGCAAATGGCAGTCCAGTTCCTCACTTGAGCACCCCTCCTGGACCTCCTGTCTTTACATCACCTGTCCGTCCGGCCGCTGTTCCTTTTCGAACATCACCGGTTTTGCCTCAGCCGCCGGCTCTTTCTACTGCATCTTCTTTGCCAACCTCATCGTCCCCCCCTTACTCAAATGGATCGTTCGACTTGCAGTCACAACCTTCTGGTGGATTAGAGGATCACATTCCACTTGGGGAGTCATCATCCTTTGTACTGTTTTCAGCTCATAAGGTATTGAAGCAGAAGAAACAAGCTAATGTGCCCAGTTTGGGTTTCGGGGCATTGGTCTCTCCTGGGAGGGAGGTCTCAACAGGTCCCCAGGTAATACAGCGTGATCCCCATCGCTGTCAAAGCTGTGGGGCATATGCAAATATATATTGCAATATATTGCTTGGATCAGGCCAGTGGCAGTGTGTTATTTGTCGAAAACTGAATGGAAGTGATGGTGAGTACATTGCACATAGCAAGGAAGATCTTCACAGATTTCCAGAATTATCCTCACCAATGGTTGACTTTGTTCAAACTGGGACCAAGAGACCTGGTTATGTTCCAGTTTCAGATTCCAGAATGTCTGCGCCAGTAGTTCTTGTAATAGATGAATGTTTAGATGAACCTCACTTACACCATCTTCAGAGCTCGTTGCATGCATTTGTTGATTCTCTCCCTCCAACAACAAGATTAGGAATTATACTATACGGCCGTACTGTATCAGTGTATGACTTTTCAGAAGAGTCAGTTGCATCTGCCGATGTGCTTCCCGGGGACAAGTCACCAAGTCAAGATTCTTTGAAGGCTTTGATTTATGGTACCGGTATATATTTGTCACCAATGCATGCTTCACTGGCTGTAGCGCATTCTATATTTTCATCATTGAGACCATATAAGTTGAATGTACCAGAAGCTTCCAGAGATCGGTGCCTAGGAACTGCTGTTGAGGTTGCTCTCGCTATAATTCAGGGCCCATCTGCCGATCTGTCCCGAGGGGTAGTCAAAAGATCAGGGGGTAATAGTAGAATTATTGTCTGTGCTGGTGGTCCAAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTTAACCACCCTAATTATCCATATATGGAAAAGACAGCATTAAAATGGATGGAGAATTTAGGTCGCGAGGCTCATCGACACAATATATTGGTTGATATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTTGCAAAAGCATCAGGTGGTGTTTTGGTTCTTCACGATGATTTTGGAGAAGCCTTCGGCGTTAATTTACAAAGGGCATCTGCCAGATCAGCAGGCTCCCATGGATTGTTAGAATTGCGGACATCAGATGATATTCTCATTACGCAAGTTGTGGGTCCGGGGGAAGAGTCGCATGTAGACACCCATGAAACATTTAAAAACGATACCGCTCTTTATATTCAAATGCTAAGTGTTGAAGAGACACAGAGCTTCTCTCTCTCCATGGAAACCAAAGGAGATATCAAAGGCGATTTTGTTTTTTTCCAGTTTGCAATTCAGTATTCAAATGTGTATCAGGCGGATGTCTCAAGGGTCATTACTGTAAGATTGCCAACAGTAGATAGTATTTCGGGATATCTTGAGAGTGTTCAAGATGAAGTGGCTGCGGTCCTCATTGCAAAGAGAACTCTTTTACGAGCCAAAAACCATTCTGTTGCTGTTGATATGCGGGCAACAATAGATGAAAGAATCAAAGATATTGGTCTAAAATTTGGCTCTCAATTACCCAAATCAAAACTTCATTGCTTCCCAAAGGAGCTGTCTCTCTTACCGGAGCTCCTTTTCCATCTCAGGAGAGGCCCACTATTGGGATGCATTATTGGCCATGAAGATGAGAGGTCTGTGTTGAGGAACCTGTTTCTAAATGCATCCTTTGATCTATCGCTCAGAATGGTGGCTCCACGTTGTCTAATGCACAGGGAGGGTGGAACTTTTGAGGAGCTACCGGCTTATGATCTTGCTATGCAATCTGATACTGCTGTTGTACTTGACCATGGCACTGATGTCTTCATTTGGCTGGGTGCTGAACTTGTATATGATGAAGGAAAAAGTGCCGCTGCTTTGGCTGCATGCAGGACATTGGCTGAAGAACTGACTGAATTCCGTTTTCCAGCTCCTCGTATCCTAGCATTCAAGGAGGGTAGCTCGCAGGCTCGATATTTTGTGTCGCGTCTCATACCAGCTCACAAGGATCCTCCTTATGAGCAGGAGGCAAGGTTTCCACAACTACGAACATTAACATCAGAACAAAGAACAAAGCTGAAAAGCAGTTTTGTTCACTTCGATGATCCAAGTTTCTGTGAATGGATGCGAAGTTTAAAGGTCGTACCCCCGCAACCGAGCTGA 2589 0.445 MANNPTQPNVGFIPSNPEQEQDRQTPIHPPPPPPTFAAPPRFPPPILHLQKDQGSIHSANGSPVPHLSTPPGPPVFTSPVRPAAVPFRTSPVLPQPPALSTASSLPTSSSPPYSNGSFDLQSQPSGGLEDHIPLGESSSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSTGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYIAHSKEDLHRFPELSSPMVDFVQTGTKRPGYVPVSDSRMSAPVVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIILYGRTVSVYDFSEESVASADVLPGDKSPSQDSLKALIYGTGIYLSPMHASLAVAHSIFSSLRPYKLNVPEASRDRCLGTAVEVALAIIQGPSADLSRGVVKRSGGNSRIIVCAGGPNTYGPGSVPHSFNHPNYPYMEKTALKWMENLGREAHRHNILVDILCAGTCPVRVPILHPLAKASGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTALYIQMLSVEETQSFSLSMETKGDIKGDFVFFQFAIQYSNVYQADVSRVITVRLPTVDSISGYLESVQDEVAAVLIAKRTLLRAKNHSVAVDMRATIDERIKDIGLKFGSQLPKSKLHCFPKELSLLPELLFHLRRGPLLGCIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDHGTDVFIWLGAELVYDEGKSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRTLTSEQRTKLKSSFVHFDDPSFCEWMRSLKVVPPQPS* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0406 862 CDD gelsolin_like 715 806 - -
Tpr6g0406 862 MobiDBLite consensus disorder prediction 91 114 - -
Tpr6g0406 862 Pfam Sec23/Sec24 trunk domain 265 491 IPR006896 GO:0006886|GO:0006888|GO:0030127
Tpr6g0406 862 Pfam Sec23/Sec24 zinc finger 183 221 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tpr6g0406 862 Gene3D von Willebrand factor, type A domain 263 508 IPR036465 -
Tpr6g0406 862 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 715 855 IPR036180 -
Tpr6g0406 862 Pfam Sec23/Sec24 helical domain 614 710 IPR006900 GO:0006886|GO:0006888|GO:0030127
Tpr6g0406 862 MobiDBLite consensus disorder prediction 94 114 - -
Tpr6g0406 862 MobiDBLite consensus disorder prediction 1 23 - -
Tpr6g0406 862 SUPERFAMILY beta-sandwich domain of Sec23/24 14 611 - -
Tpr6g0406 862 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 50 862 - -
Tpr6g0406 862 Gene3D Severin 729 826 IPR029006 -
Tpr6g0406 862 SUPERFAMILY Helical domain of Sec23/24 613 713 IPR036175 GO:0006886|GO:0006888|GO:0030127
Tpr6g0406 862 MobiDBLite consensus disorder prediction 24 46 - -
Tpr6g0406 862 Gene3D - 173 236 - -
Tpr6g0406 862 SUPERFAMILY Zn-finger domain of Sec23/24 173 245 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tpr6g0406 862 CDD trunk_domain 257 500 - -
Tpr6g0406 862 Pfam Sec23/Sec24 beta-sandwich domain 509 600 IPR012990 -
Tpr6g0406 862 Gene3D Sec23/Sec24 helical domain 602 721 - -
Tpr6g0406 862 MobiDBLite consensus disorder prediction 1 66 - -
Tpr6g0406 862 SUPERFAMILY vWA-like 264 496 IPR036465 -
Tpr6g0406 862 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 50 862 IPR037364 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0406 - - gmx:100781518 1509.97