Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr6g0405 | ATGGCTGGTACCGAAGCCACAAAACAACAATCCGGCGGCGGTGGAAAACAACCTAAACAACCTAAACAACCTAAACAACCAAAACAACAACAATCTGGTGGTGGTGGAGGGAAGAAGAAGGAAGTGAAGAAAGAGACTGGATTAGGTTTAACTAATAAGAAGGCTGATAACTTCGGAGAGTGGTATTCTGAGGTTGTTGTTAATGGTGAGATGATTGAGTACTATGACATTTCTGGTTGCTATATTCTCAGACCTTGGTCAATGGCTATTTGGGAGATTATGCAAGCGTTTTTTGATCCAGAAATAAAGAAGATGAAGATCAAGAACTGCTATTTCCCTGTGTTTGTTTCTTCTACTGTTCTGGAAAAGGAGAAGGACCATATCGAGGGTTTTGCTCCAGAGGTGGCTTGGGTGACAAGATCTGGAAAATCTGAGCTAGAGATTCCTATTGCTATTCGTCCAACTAGTGAAACGGTTATGTATCCTTACTACTCCAAGTGGATAAGGGGACACCGTGATTTGCCACTGAAACTTAATCAGTGGTGCAACGTTGTTAGATGGGAGTTCAGCAATCCTACACCATTCATCAGGAGTCGCGAGTTTCTTTGGCAAGAAGGACACACTGCTTTTGCTACTAAGGAGGAAGCAGATACAGAGGTTCTTGAGATTTTGGAGTTATATAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCGGGTGGACTTTACACTACCAGTGTTGAGGCCTTTATTCCAAATACTGGTCGTGGCATTCAAGGTGCAACTTCTCATTGTTTGGGACAAAATTTTGCCAAGATGTTTGACATAAACTATGAAAATGAGAAGGGAGAGAGAGCAATGGTCTGGCAAAACTCATGGGCCTACAGTACCCGAACTATTGGGGTGATGGTGATGGTACATGGCGATGATAAGGGATTGGTGCTGCCTCCTAAAGTAGCATCAGTTCAAGTTATTGTGATTCCTGTGCCATACAAAGATGCTGATACTCAAGGAATCTTGGATGCTTGTTCTGAAACTGTGAATGCGTTGTTGGAAGCAGGAATTCGCGCTGAGTCAGACTCGAGAGATAACTATTCACCCGGATGGAAGTATTCTCAGTGGGAAATGAAAGGTGTTCCTCTGAGGATTGAAATTGGGCCAAAGGATTTAGCCAATAAGCAGGTTCGTGCTGTTCGTCGTGACAGTGGAGCAAAAATAGACATTGCGAATGCTGGTTTGGTTGAGGAAATCAAAAAATTGCTTGATAATATTCAACAGAATCTGTTTGATGTCGCAAAACAAAAACGGGATGAGTGTATTCAGGTCATACATACTTGGGAGGAGTTTATAGAAGCTTTAAATCAAAAAAAGATGATCTTAGCTCCTTGGGCTGATGAGAAGGAGGTTGAAGAAGATGTCAAAGCAAGGACAAAGGGTGAGACTGGAGCAGCAAAGACACTCTGCAGTCCCTTTGATCAGCCAGAACTCCCCGAAGGAACCATATGCTTTGCGTCCGGCAAGCCTGCAAAGAAGTGGTCATACTGGGGCAGAAGTTATTAG | 1596 | 0.4305 | MAGTEATKQQSGGGGKQPKQPKQPKQPKQQQSGGGGGKKKEVKKETGLGLTNKKADNFGEWYSEVVVNGEMIEYYDISGCYILRPWSMAIWEIMQAFFDPEIKKMKIKNCYFPVFVSSTVLEKEKDHIEGFAPEVAWVTRSGKSELEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADTEVLEILELYRRIYEEYLAVPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFDINYENEKGERAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGILDACSETVNALLEAGIRAESDSRDNYSPGWKYSQWEMKGVPLRIEIGPKDLANKQVRAVRRDSGAKIDIANAGLVEEIKKLLDNIQQNLFDVAKQKRDECIQVIHTWEEFIEALNQKKMILAPWADEKEVEEDVKARTKGETGAAKTLCSPFDQPELPEGTICFASGKPAKKWSYWGRSY* | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr6g0405 | 531 | SUPERFAMILY | C-terminal domain of ProRS | 454 | 531 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Tpr6g0405 | 531 | CDD | ProRS_core_arch_euk | 57 | 318 | IPR033721 | - | |
| Tpr6g0405 | 531 | Gene3D | - | 329 | 449 | IPR036621 | - | |
| Tpr6g0405 | 531 | Gene3D | - | 452 | 531 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Tpr6g0405 | 531 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 150 | 316 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Tpr6g0405 | 531 | Coils | Coil | 426 | 446 | - | - | |
| Tpr6g0405 | 531 | Pfam | Anticodon binding domain | 335 | 431 | IPR004154 | - | |
| Tpr6g0405 | 531 | SUPERFAMILY | Class II aaRS ABD-related | 323 | 450 | - | - | |
| Tpr6g0405 | 531 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Tpr6g0405 | 531 | Pfam | Prolyl-tRNA synthetase, C-terminal | 458 | 531 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Tpr6g0405 | 531 | PRINTS | Prolyl-tRNA synthetase signature | 109 | 127 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Tpr6g0405 | 531 | PRINTS | Prolyl-tRNA synthetase signature | 150 | 161 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Tpr6g0405 | 531 | PRINTS | Prolyl-tRNA synthetase signature | 180 | 188 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Tpr6g0405 | 531 | PRINTS | Prolyl-tRNA synthetase signature | 190 | 201 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Tpr6g0405 | 531 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Tpr6g0405 | 531 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 90 | 328 | IPR006195 | - | |
| Tpr6g0405 | 531 | Hamap | Proline--tRNA ligase [proS]. | 51 | 531 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Tpr6g0405 | 531 | CDD | ProRS_anticodon_zinc | 324 | 531 | - | - | |
| Tpr6g0405 | 531 | SUPERFAMILY | Class II aaRS and biotin synthetases | 56 | 322 | IPR045864 | - | |
| Tpr6g0405 | 531 | TIGRFAM | proS_fam_I: proline--tRNA ligase | 52 | 531 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Tpr6g0405 | 531 | Gene3D | Bira Bifunctional Protein; Domain 2 | 51 | 328 | IPR045864 | - | |
| Tpr6g0405 | 531 | PANTHER | BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE | 16 | 531 | - | - | |
| Tpr6g0405 | 531 | PANTHER | PROLYL-TRNA SYNTHETASE | 16 | 531 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Tpr6g0405 | 531 | SMART | ProRS_C_1_2 | 458 | 531 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr6g0405 | Tpr-Chr6 | 3322186 | 3327077 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr6g0405 | K01881 | - | gmx:100782067 | 948.732 |