Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0402 ATGTCTTTTTCCTTTATCTCCCAATTATTCTTTTGTTTTACCGTTTTTATCTACTTTGTATCTTTAAGAGTTGAATCATGGGGCACCCCTATTATACCAATCTCATCTCTAGTAACTAAGAGCCTTTATGATACAATTTTCCTACACAAAGATGACACTGCATGTCCTGCAAAAAACTTTTACCCTTACCAATCCTTCATTAAAGCTTCTAAATATTTCCCTCAATTTGGTACTACAGGTTGTTTGGCCACAAGAAAACGTGAGATAGCTGCTTTTCTTGCTCAGATTTCACATGAAACAACTGGTGGATGGGAAACTGCACCTGATGGACCATTTTCTTGGGGATTATGCTTCAAAGAAGAAATTAGTCCTCAGAGTAATTATTGTGATTCTACTAATAAAGATTGGCCTTGTTTTGAAGATAAAAGTTACAAAGGAAGAGGTCCTATTCAACTTTCTTGGAATTACAACTATGGACCAGCAGGGAAGGCCTTAGGATTTGATGGGCTGAAGAATCCAGAAATAGTATCAAACAATTCAGTGATTGCTTTCAAAACTGCTCTATGGTTTTGGATGACAGAGAGAAAACCAACACCTTCTTGTCACAATGTTATGGTTGGAAAATATGTGGCAACAAAAGTTGACATAGCTGCTAATCGCACTGCTGGTTTTGGCTTAGTAACAAACATAATCAATGGTGGATTAGAATGTGGAATTCCAAATGATGAAAGAGTTAATGATCGTATTGGATTTTTCAAAAGATATACCAAGCTGTTCAATGTGGATACTGGACCTAACTTGGATTGTGCATATCAAAAATCCTTATAG 828 0.3623 MSFSFISQLFFCFTVFIYFVSLRVESWGTPIIPISSLVTKSLYDTIFLHKDDTACPAKNFYPYQSFIKASKYFPQFGTTGCLATRKREIAAFLAQISHETTGGWETAPDGPFSWGLCFKEEISPQSNYCDSTNKDWPCFEDKSYKGRGPIQLSWNYNYGPAGKALGFDGLKNPEIVSNNSVIAFKTALWFWMTERKPTPSCHNVMVGKYVATKVDIAANRTAGFGLVTNIINGGLECGIPNDERVNDRIGFFKRYTKLFNVDTGPNLDCAYQKSL* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0402 275 Pfam Chitinase class I 37 269 IPR000726 GO:0004568|GO:0006032|GO:0016998
Tpr6g0402 275 Gene3D Endochitinase, domain 2 120 178 - -
Tpr6g0402 275 PANTHER OS05G0138200 PROTEIN 27 274 - -
Tpr6g0402 275 CDD chitinase_GH19 38 269 - -
Tpr6g0402 275 ProSitePatterns Chitinases family 19 signature 2. 182 192 IPR000726 GO:0004568|GO:0006032|GO:0016998
Tpr6g0402 275 Gene3D - 41 274 - -
Tpr6g0402 275 PIRSF Endochitinase 11 275 IPR016283 GO:0004568|GO:0005975
Tpr6g0402 275 PANTHER CHITINASE-RELATED 27 274 - -
Tpr6g0402 275 SUPERFAMILY Lysozyme-like 34 274 IPR023346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0402 Tpr-Chr6 3300777 3302578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0402 33 273 Glycoside Hydrolase AT4G01700 73.859 1.53e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0402 - - gmx:100784196 480.33