Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0390 ATGACTCCAACAATTCTGCTTCTAGCTTCCTTATTTTTAGCTTTATCCGCTTCTTATATCTCGAACGGTGAGGTGGAAAAAGACCAGCTTACTGAACTCAAGCTTAATTCTCATATCCTTCAGGAATCTATTATTAAACATGTTAACGAAAATCCAGTGGCAGGGTGGGAGGCTGCTATTAATCCCCGTTTCTCCAATTATACAGTTCGACAATTTAAGCGCCTCCTTGGTGTCAAGCAAACAACTGGGAATGAATTGAGTAGTATACCTGTTGTAACTCATCCAAAATCATTAAAATTGCCAAAGGATTTTGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTGCTTGTTGGGCATTTGGTGCTGTTGAATCATTATCAGATCGTTTTTGCGTTCATTTTGGCGTGAATGTATCCCTATCTGTTAATGACATTCTTGCATGCTGTGGCCTTCTTTGTGGGGTTGGCTGTTCTGGGGGGACTCCCTTTTCTGCATGGATATACTTAGCTAACCATGGTGTTGTCACTGAAGAGTGTGATCCATACTTCGATCAAATTGGATGTTCTCATCCAGGTTGTGAGCCAGCTTATCGAACTCCAAAGTGCGTTAAAAAGTGTGTAAATGGGAACCAGCCTTGGGAGGCGTCAAAGCACTATTGTGTCAAAGCATATACGGTCAACTCCGATCCCCAGGATATCATGGCAGAAGTTTATAAGAACGGTCCAGTTGAAGTTGCATTCACTGTTTATGAGGATTTCGCTCACTACAAATCAGGAGTTTATAAACACATCACAGGTTCTGCACTAGGCGGTCACGCAGTAAAACTGATCGGATGGGGAACAAGTGAAGAAGGGGAGGACTATTGGCTTCTTGCGAATCAGTGGAATAGAAATTGGGGAGATGATGGTTACTTTAAGATCAAGAGAGGAACAAATGAATGTGGGATCGAAAATGCTGTTACTGCTGGCTTGCCTTCTACCAAAAATATGGTGAGAGAGGTGATTGACATGGATGCTGATGGTGATGTTTCATTTTGA 1071 0.4239 MTPTILLLASLFLALSASYISNGEVEKDQLTELKLNSHILQESIIKHVNENPVAGWEAAINPRFSNYTVRQFKRLLGVKQTTGNELSSIPVVTHPKSLKLPKDFDARTAWSQCSTIGRILDQGHCGACWAFGAVESLSDRFCVHFGVNVSLSVNDILACCGLLCGVGCSGGTPFSAWIYLANHGVVTEECDPYFDQIGCSHPGCEPAYRTPKCVKKCVNGNQPWEASKHYCVKAYTVNSDPQDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHITGSALGGHAVKLIGWGTSEEGEDYWLLANQWNRNWGDDGYFKIKRGTNECGIENAVTAGLPSTKNMVREVIDMDADGDVSF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0390 356 CDD Peptidase_C1A_CathepsinB 101 334 - -
Tpr6g0390 356 SMART pept_c1 100 335 IPR000668 GO:0006508|GO:0008234
Tpr6g0390 356 PRINTS Papain cysteine protease (C1) family signature 122 137 IPR000668 GO:0006508|GO:0008234
Tpr6g0390 356 PRINTS Papain cysteine protease (C1) family signature 283 293 IPR000668 GO:0006508|GO:0008234
Tpr6g0390 356 PRINTS Papain cysteine protease (C1) family signature 299 305 IPR000668 GO:0006508|GO:0008234
Tpr6g0390 356 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 342 - -
Tpr6g0390 356 SUPERFAMILY Cysteine proteinases 38 336 IPR038765 -
Tpr6g0390 356 Pfam Papain family cysteine protease 100 333 IPR000668 GO:0006508|GO:0008234
Tpr6g0390 356 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 281 291 IPR025660 -
Tpr6g0390 356 Gene3D Cysteine proteinases 30 342 - -
Tpr6g0390 356 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 122 133 IPR000169 -
Tpr6g0390 356 Pfam Peptidase family C1 propeptide 40 81 IPR012599 GO:0004197|GO:0050790
Tpr6g0390 356 PANTHER CATHEPSIN B-LIKE PROTEASE 3 25 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0390 Tpr-Chr6 3195676 3199095 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0390 K01363 - gmx:100788988 601.668