Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0362 ATGGGGACTGAAAATCCGGGTCGTCCCAACTTCCCTTCAAGGCCTACTTCCTTGCCTTTTGCTTCTGCACAGACTATGACTACACCTTTTTCATCAATGGGTCCTGTGGCTGGATCAGAGCCTCCTTCTTTCCGACCTACTCCTCCTGCAACTTCTCAAACGCCCACGCCGTTTTCATCGTCTGGACCTCCTGTTAGACCAGGAGCACCCAGTTTTAGACCTACACCACCAGGCAGGTTCAATGATCCATCAGTGGCTCCTCCTCCTCCACCATCATCCAATGTCCCGCCAGCGCAGGCTGCTGGATCTTTCCAGCATTTTCCAGCACCACCCTTTTCCTCGACAGTTCAGCCTCCTCTGACACGGCCTCCACCCTTGGGACAACCATCAATTCAACAGCATGCAAGTCAAGCACCTCCCTTTCCATCATCTGTTCCACCTCAGCCACAGATGCCGTATGTTCAAATGGGGTCTCCACCTATGGGTTCAAATGTTCCTCCTCCCCAATTTCAGCCGTCAGTTCCTGGATATGCCCGAATGCAGCCTGGGGCTGAAATGCAACCTCCACCTTTGCATTCCTCTATTCATGCAAATCAAGGAAATTACGGACCTGCACCGCCTGCAGCAGCATCTCCCTTTTTACCCCATCAAGGAGGCTATCCTTCATCACTACCAGTGGCTACTCCAATAGGTGTCCAGCCACAGCAACCAGGATATGTACCCCCGAGTGGTGCCATTCAGGGATTGACAGAAGACTTCAGTTCACTCACAATGCAAACCCGTCCTGGAACAATGGATCCATTATTTGATGCTAAAGAACTTCCAAGGCCGTTGGAAGGTGACGTGGAGCCGAAGAATTTGGCTGAGATGTATCCCACGAATTGCAAACCTAGATATATGCGATTCACTACCAGTGCAATTCCTAGCTCCCAGTCCTTAGCTTCAAGATGGCAACTGCCTCTTGGAGCAGTTGTATGTCCACTTGCTGAATCTCCAGATGGGGAAGAAGTGCCTATAATTAGTTTTGCTCCAGCTAGTGTTGTGCGCTGTAGAAGATGCCGCACATATGTGAACCCTTATGTGACATTTACAGAAGCTGGAAGAAAGTTCCGGTGCAATGTATGCGCCTTGCTTAATGATGTTCCTAGTGAATATTATGCACAGTTAGATGCCACTGGAAAAAGAGTTGATTTGAATCAACGACCCGAGCTTACAAAGGGTACCGTAGAATTTGTTGCCCCTACTGAGTATATGGTGCGGCCTCCTATGCCCCCAGTATATTTTTTCCTCATCGATGTTTCCATATCTGCTGTTAGAAGTGGCATGATTGAGGTTGCAGCCCAAACTATCAAGTCCTGCTTAGATGAGCTGCCTGGCTTTCCACGGACACAAATAGGGTTTGCAACTTTTGACAGCACTATACATTTTTATAACTTGAAGTCAACCTTGACTCAACCACAGATGTGGGTAGTCTCAGATCTGGATGACATATTTATTCCGCTCCCAGATGATCTTCTTGTTAACTTATCTGAGTCAAGAAGTGTGGTGGAAGCCTTCCTAGATAGTTTGCCAACTATGTTTCAAGATAATGTTAATCTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCTTTCATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTTCCATCTCTTGGTGTTGGTCGCTTGAAGTTACGGGGAGATGATTCCCGTGTTTATGGGACAGATAAAGAACACGGATTGAGACTGCCCGAAGATCCATTTTATAAGCAAATGGCAGCTGAGTTTTCTAAGTACCAAATCTCAGTAAATGTCTATGCATTCAGCGATAAGTACACTGACATAGCCTCCTTAGGAACTTTGGCAAAGTACACTGCTGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGCCATACATGGGGAGAAATTGAGTCATGAATTAAGGAGAGACCTCACTAGAGAAACTGCATGGGAAGCTGTAATGCGTATCAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTCATGCTAAGGTCCACAGATTTGTTAGCACTTCCAGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAGACATTATTGACAACTCAGACTATTTATTTTCAAGTTGCTTTGCTTTATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTGCCGGTAGTTACAGATTTGGCAGATATGTATCGCCTGGCTGATACTGGGGCAGTTGTCTCTCTATTTTCCAGGCTAGCAATTGAGAAAACATTGTCCCAAAAATTGGAAGATGCACGGAGTGCTGTGCAACTAAGAATTGTGAAAGCCCTCAAGGAGTACCGAAATCTTTATGCCGTGCAGCATCGCTTGGCTAACAGAATGATATATCCCGAGTCTTTAAAGTTCCTAATGTTGTATGGATTAGCTCTTTGTAGATCAACAGCTCTACGTGGAGCGTATGGCGATGTTCCACTAGATGATCGATGTGCAGCAGGACATACAATGATGACTCTACCTATAAAAAGATTGTTGAAATTTCTCTATCCTAGCTTGATTCGACTTGATGAATATCTTTTGAAGCCATCGGTACAAGCTGATGATCTCAAAACTATCGATAGAAGGTTACCTTTGACTGGGGAGAGCTTAGACTCTAGGTGCCTTTATATATATGATGATGGCTTCCGGTTTATTATATGGTTTGGTAAGGTGATTTCACCTGATATAGCAAAGAATTTACTTGGAGCAGACTTTGCGGCGGAACTATCAAAGGCTACTCTCAATGAGCATAATAATGAAATGTCAAGGAGGTTGATGGGGGTACTTGAAAAATTAAGAAATGATGATCGTGCATATTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACAACCCAAAGAAGGATTCCTCCTTCTTGCAAACCTTGTTGAGGATCAGATGGGTGGTAACAGTGGGTATTCTGATTGGATGCTACAGATATCCCGACAAGTGCAACACTCATAA 3054 0.4486 MGTENPGRPNFPSRPTSLPFASAQTMTTPFSSMGPVAGSEPPSFRPTPPATSQTPTPFSSSGPPVRPGAPSFRPTPPGRFNDPSVAPPPPPSSNVPPAQAAGSFQHFPAPPFSSTVQPPLTRPPPLGQPSIQQHASQAPPFPSSVPPQPQMPYVQMGSPPMGSNVPPPQFQPSVPGYARMQPGAEMQPPPLHSSIHANQGNYGPAPPAAASPFLPHQGGYPSSLPVATPIGVQPQQPGYVPPSGAIQGLTEDFSSLTMQTRPGTMDPLFDAKELPRPLEGDVEPKNLAEMYPTNCKPRYMRFTTSAIPSSQSLASRWQLPLGAVVCPLAESPDGEEVPIISFAPASVVRCRRCRTYVNPYVTFTEAGRKFRCNVCALLNDVPSEYYAQLDATGKRVDLNQRPELTKGTVEFVAPTEYMVRPPMPPVYFFLIDVSISAVRSGMIEVAAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNLKSTLTQPQMWVVSDLDDIFIPLPDDLLVNLSESRSVVEAFLDSLPTMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISVNVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLSHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTIYFQVALLYTASCGERRIRVHTMAVPVVTDLADMYRLADTGAVVSLFSRLAIEKTLSQKLEDARSAVQLRIVKALKEYRNLYAVQHRLANRMIYPESLKFLMLYGLALCRSTALRGAYGDVPLDDRCAAGHTMMTLPIKRLLKFLYPSLIRLDEYLLKPSVQADDLKTIDRRLPLTGESLDSRCLYIYDDGFRFIIWFGKVISPDIAKNLLGADFAAELSKATLNEHNNEMSRRLMGVLEKLRNDDRAYYQLCHLVRQGEQPKEGFLLLANLVEDQMGGNSGYSDWMLQISRQVQHS* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0362 1017 Gene3D Severin 867 995 IPR029006 -
Tpr6g0362 1017 SUPERFAMILY Helical domain of Sec23/24 759 866 IPR036175 GO:0006886|GO:0006888|GO:0030127
Tpr6g0362 1017 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 876 1015 IPR036180 -
Tpr6g0362 1017 MobiDBLite consensus disorder prediction 112 126 - -
Tpr6g0362 1017 Gene3D Sec23/Sec24 helical domain 748 1014 - -
Tpr6g0362 1017 Pfam Sec23/Sec24 zinc finger 348 385 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tpr6g0362 1017 PANTHER OS04G0129500 PROTEIN 28 1016 - -
Tpr6g0362 1017 MobiDBLite consensus disorder prediction 60 96 - -
Tpr6g0362 1017 CDD Sec24-like 422 663 IPR041742 GO:0006886|GO:0006888|GO:0030127
Tpr6g0362 1017 Pfam Sec23/Sec24 beta-sandwich domain 664 748 IPR012990 -
Tpr6g0362 1017 Pfam Sec23/Sec24 helical domain 759 862 IPR006900 GO:0006886|GO:0006888|GO:0030127
Tpr6g0362 1017 SUPERFAMILY beta-sandwich domain of Sec23/24 187 757 - -
Tpr6g0362 1017 SUPERFAMILY Zn-finger domain of Sec23/24 340 421 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tpr6g0362 1017 Gene3D - 293 406 - -
Tpr6g0362 1017 MobiDBLite consensus disorder prediction 1 150 - -
Tpr6g0362 1017 SUPERFAMILY vWA-like 422 662 IPR036465 -
Tpr6g0362 1017 Gene3D von Willebrand factor, type A domain 424 661 IPR036465 -
Tpr6g0362 1017 Pfam Sec23/Sec24 trunk domain 422 658 IPR006896 GO:0006886|GO:0006888|GO:0030127
Tpr6g0362 1017 Gene3D - 295 747 - -
Tpr6g0362 1017 MobiDBLite consensus disorder prediction 1 34 - -
Tpr6g0362 1017 PANTHER SEC24-RELATED PROTEIN 28 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0362 Tpr-Chr6 2901861 2911149 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0362 K14007 - gmx:100791083 1651.72