Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0360 ATGGGGTTCCAAAACTTGGCTTTTTTAATTTTTATTGTGACAATATTGAATGTACTACTTGTTGGTCAATATGTGAGTTGCAAGCGTGTTAATGGTAATCATCATCGTTATCATCGTCAACATACCTCACACGCTCACTTAATTAATAGTAAAACACTTTATGAAAGTGGTTTCGCTCAACGAAATGGAACTCATTTCGTTATGAACGGGAAACCATTGTACTTAAACGGTTTCAATTCATATTTTTTAATGAACGTAGCATCAGATCCATCTACAATGTCCAAAGTTACTACAACTTTTCAACAAGCCTCTCAAAATGGTTTGAACTTAGCAAGAACATGGGCCTTTAATGATGGAGGTTATAAAGCCCTTCAAACTTCACCTGGTTCTTATGATGAGGATGTATTTAAGGGATTGGATTTTGTGATATCAGAAGCAGGGAAAAATGGAGTGCAACTCATACTAAGCTTGGTGAATAATTGGAATGATTATGGGGGGAAAAGTCAATATGTGCAATGGGCCAAAGAGAGGGGTCAATCAGTGAACAATGATGATGATTTCTTCTTGCACCCAGTTGTTAAACAATATTACAAAAATCATGTTGCGGCTGTTTTGACTAGAAATAATACTATTACTGGATTGGCTTATAAGGATGATCCAACCATTTTTGCATGGGAGCTTATGAATGAACCTCGTTGTCAAAGTGACTCTTCCGACACATCAATTCAGAGTTGGGTGAGTGAAATGGCTCCCTATGTGAAGTCTATTGATAGCAACCATTTACTAGAAATTGGTCTTGAAGGATTTTATGGTCAAACAATGATAGAAAAGAATCCTGGTTATCAAGTTGGAACAGATTTCATTTCCAATAATCAAGTTGCTGAAATCGATTTCGCCACCATTCATCTCTACCCCGAATCATGGGTATCAAGCACAGATGAAACAGCTCAAGATGCATTTGTTGACAAGTGGGTACAAATCCATATTGAAGATTCAAATAACATTTTAAATAAACCAATTCTTATTACTGAATTTGGAAAGTCTTCAAAATATTCTGGATATAACGTGGAAAAGAGGAATAGTTACTTTGAAAAGCTATACAATTTCGTGTACAATAGTGCAAGCAATGGAGGCCCATGTGCTGGTGGGCTTTTCTGGCAGTTTATGGCCCAAGGATTGGATAGTTTCCGTGATGGCTATGAAGTCATACTTGAAGAGAACCCTTCAACTGCTACGGTTATTAGTCAACAATCTACAAAAATGTCAAATCTTAAATAA 1278 0.3646 MGFQNLAFLIFIVTILNVLLVGQYVSCKRVNGNHHRYHRQHTSHAHLINSKTLYESGFAQRNGTHFVMNGKPLYLNGFNSYFLMNVASDPSTMSKVTTTFQQASQNGLNLARTWAFNDGGYKALQTSPGSYDEDVFKGLDFVISEAGKNGVQLILSLVNNWNDYGGKSQYVQWAKERGQSVNNDDDFFLHPVVKQYYKNHVAAVLTRNNTITGLAYKDDPTIFAWELMNEPRCQSDSSDTSIQSWVSEMAPYVKSIDSNHLLEIGLEGFYGQTMIEKNPGYQVGTDFISNNQVAEIDFATIHLYPESWVSSTDETAQDAFVDKWVQIHIEDSNNILNKPILITEFGKSSKYSGYNVEKRNSYFEKLYNFVYNSASNGGPCAGGLFWQFMAQGLDSFRDGYEVILEENPSTATVISQQSTKMSNLK* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0360 425 SUPERFAMILY (Trans)glycosidases 58 414 IPR017853 -
Tpr6g0360 425 Gene3D Glycosidases 54 425 - -
Tpr6g0360 425 Pfam Cellulase (glycosyl hydrolase family 5) 69 362 IPR001547 GO:0004553|GO:0071704
Tpr6g0360 425 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 37 425 - -
Tpr6g0360 425 PANTHER - 37 425 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0360 Tpr-Chr6 2889277 2891953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0360 55 425 Glycoside Hydrolase AT1G02310 56.168 1.51e-159 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0360 K19355 - gmx:100791612 635.18