Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0356 ATGAGTAGCTATGGCGGTAACTCTTCTCAGATTCAAAGTGTGCCATTATTCTCATTTCTATTTCTATTTCTATGGATGCTTTCTTCTTCTTCTTCATTAGTTGTCAGTGTTGTTAATAACAATGGATGCAATAAACCAGCAGTTCTATTCGTGTTTGGTGATTCAAACTCGGACACGGGTGGACTCGTTTCTGGACTCGGTTTTCCTGTCAATCTTCCCAATGGTCGGACTTTCTTTCACAGATCCACCGGTCGTTTGTCTGATGGACGCCTCGTCATTGACCTTCTCTGCCAAAGTTTGAATACAAGATTTTTGACCCCATACTTGGACTCCATGTCTGGATCCACATTCACAAATGGTGCAAACTTTGCAGTGGTAGGATCCTCTACCCTTCCAAAATATGTTCCTTTCTCTTTAAATATTCAGGTGATGCAGTTCCAGCATTTCAAAGCTCGTAGCCTCGAACTTGCTACCACAGGTGCAAAAAATGCGATCAACGACGCAGGCTTCCGGGATGCACTCTACTTGATTGACATTGGGCAAAATGACCTTGCTGATTCATTTACCAAGGGTCTATCATATGTGCAAGTCACCAAGAGGATCCCAACAGTTATCATTGAAATTGAGAATGCTGTTAAGAGTCTGTATAATGAAGGTGGCAGGAAATTTTGGATACACAATACTGGGCCCTTTGGCTGTCTTCCTAAATTAATCGTACTGTCTCAGAAGAAAGATCTCGATTCATTTGGATGTCTTTCTAGTTACAATTCTGCTGCAAAATTGTTTAACGAAGCGCTGTATCATTCAAGTCAGAAACTAAGAACTGAATTGAAGGATGCTACCATAGTCTATGTTGATATTTATGCCATTAAGAATGACCTCATCACAAATGCCACCAAATATGGTTTCTCAAATCCATTGAGTGTATGCTGCGGCTATGGAGGTCCTCCTTATAATTTTGATGTAAGAGTGACATGCGGTCAACCTGGTTATCAAGTTTGTGATGAAGGATCTAAGCATGTGAGTTGGGATGGAATCCATTATACAGAGGCTGCAAATACATGGATAGCTTCTAAGATACTTTCAACGGCTTATTCCACACCACGGATACCTTTTGGTTTTTTCTGCCGCAACTGA 1137 0.4107 MSSYGGNSSQIQSVPLFSFLFLFLWMLSSSSSLVVSVVNNNGCNKPAVLFVFGDSNSDTGGLVSGLGFPVNLPNGRTFFHRSTGRLSDGRLVIDLLCQSLNTRFLTPYLDSMSGSTFTNGANFAVVGSSTLPKYVPFSLNIQVMQFQHFKARSLELATTGAKNAINDAGFRDALYLIDIGQNDLADSFTKGLSYVQVTKRIPTVIIEIENAVKSLYNEGGRKFWIHNTGPFGCLPKLIVLSQKKDLDSFGCLSSYNSAAKLFNEALYHSSQKLRTELKDATIVYVDIYAIKNDLITNATKYGFSNPLSVCCGYGGPPYNFDVRVTCGQPGYQVCDEGSKHVSWDGIHYTEAANTWIASKILSTAYSTPRIPFGFFCRN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0356 378 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 38 377 - -
Tpr6g0356 378 CDD SGNH_plant_lipase_like 46 362 IPR035669 -
Tpr6g0356 378 SUPERFAMILY SGNH hydrolase 49 363 - -
Tpr6g0356 378 Pfam GDSL-like Lipase/Acylhydrolase 49 360 IPR001087 GO:0016788
Tpr6g0356 378 PANTHER OS01G0329900 PROTEIN 38 377 - -
Tpr6g0356 378 Gene3D SGNH hydrolase 44 367 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0356 Tpr-Chr6 2851924 2856513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0356 49 360 Acyl Lipid Metabolism Gene Families AT4G10950 27.964 1.52e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0356 - - gmx:100797617 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0356 6 2851924 2856513 Tpr6g0356 6 2851924 2856513 ECH