Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0338 ATGTCGTATTTCATACGAAGATCACAACCTAGGATCACTACCACCTTCTCCTCGTTTCTATACAAACTTGTCGGAAACTTGTCTCAATCGCATCCCATAATTCCTTCACCAACCTTATTTTCTTGTCGCCATTCCATTCCATTTTTCTCTTCAAGGAACGGTTACTCTCACGGGCTATCTCCCACCCGGGCTCGCTTTTGGGCCTCTCAGCCCGCCGCCGCTGAACCCTCAACCTCCGATGGGCTCACAGTCCAACAAATTCTAGCCAACAATTGGCCCATTCTCGACGAAAACGACAGCGATTGGAAGAGTCATGCCATGGCTATAGCTCAATCTATTCATTTGATCAAACGCAGGTTACAGTGGAAGAAATTGAAGGTTAGGTTGGATATGTTATCAGCTCAGTTGAATAAGGAAGATCTTTGGGATGATCCTGTACTTGCAGGTAAAATAAACCGGGAGCATGGTTCGCTTCTTGGGAAAATGAAAGAGGTGAATGGATTGGAGGAAGAGTTACTTGAACATATTGAAATGATAAAGCTTGCTCGCGAAGAGAATGATGCAGAATTGGAATTGGAATCAATGAAAGCATTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAGCTAGAGGCATTGCTGGCTGACGAGCAAGATTCTTGTTCTTGCTACATTGAGGTTCAGGCTGGGGCTGGGGGTACCGAAAGCATGGACTGGGCTGCAATGATCATGGAGATGTATAAATTATGGGCCCAACGACGTGGATATAAAGTTACTGTAATGGAAGAAATGCGTGGTGAGATTGCAGGAATCAAGCGAGCTACAATCAAAGTAGATGGTGAATTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTCCACAGGCTGGTGCGCATATCACCGTTTGACAGTAACAAGCGCCGGCATACTTCATTTGCTGCTGTTGCAGTTATTCCAAACCTCGGTGAAGCATCTTCTCGTGTACAGATTAATGAATCTGATCTTCGAATTGAACGATTTCGCTCTAGTGGTGCTGGTGGACAGCATGCTAATACTACTGAGAGTGCTGTAAAAATAACTCATATTCCTACTGGAGTTACTGCAACTTGTCAGAATGAAAGGTCGCAACATCAGAATAAGGCTTCAGCAATGGCTGTGCTTCAGTCAAGATTAAACCAGCTGGAGATGGCACGCCAGGCGCAGCTGAATGCCCAGCATACACAATCCTTCACTGACATAACCTGGGGTAGTCAGATTCGTAGTTATGTTCTCCATCCTTACCGAATGGTGAAAGATCTCAGAACTAACTACGAGGTTTCAGATCCTGACTCTGTCCTTCAGGGAGACCTAGACGGTTTCATCATGAGCTATCTATCAGCTTCCTTAGATAAAAATGAAGATGATGCTTAA 1410 0.444 MSYFIRRSQPRITTTFSSFLYKLVGNLSQSHPIIPSPTLFSCRHSIPFFSSRNGYSHGLSPTRARFWASQPAAAEPSTSDGLTVQQILANNWPILDENDSDWKSHAMAIAQSIHLIKRRLQWKKLKVRLDMLSAQLNKEDLWDDPVLAGKINREHGSLLGKMKEVNGLEEELLEHIEMIKLAREENDAELELESMKALLNMRRNAKEKELEALLADEQDSCSCYIEVQAGAGGTESMDWAAMIMEMYKLWAQRRGYKVTVMEEMRGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPNLGEASSRVQINESDLRIERFRSSGAGGQHANTTESAVKITHIPTGVTATCQNERSQHQNKASAMAVLQSRLNQLEMARQAQLNAQHTQSFTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLQGDLDGFIMSYLSASLDKNEDDA* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0338 469 TIGRFAM prfB: peptide chain release factor 2 103 460 IPR004374 GO:0005737|GO:0006415|GO:0016149
Tpr6g0338 469 Pfam PCRF domain 126 315 IPR005139 GO:0006415
Tpr6g0338 469 Coils Coil 165 216 - -
Tpr6g0338 469 Pfam RF-1 domain 327 434 IPR000352 GO:0003747|GO:0006415
Tpr6g0338 469 SMART PCRF_a_2 180 290 IPR005139 GO:0006415
Tpr6g0338 469 Gene3D - 321 417 - -
Tpr6g0338 469 Hamap Peptide chain release factor 2 [prfB]. 98 462 IPR004374 GO:0005737|GO:0006415|GO:0016149
Tpr6g0338 469 Gene3D Release factor 100 211 - -
Tpr6g0338 469 SUPERFAMILY Release factor 125 461 IPR045853 -
Tpr6g0338 469 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 91 467 - -
Tpr6g0338 469 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 91 467 - -
Tpr6g0338 469 Coils Coil 384 404 - -
Tpr6g0338 469 Gene3D - 225 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0338 Tpr-Chr6 2734117 2737628 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0338 K02836 - gmx:100797427 706.442