Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3100 ATGGCAATGCAGGAAGCAAACCCTACCTCTGCTCCAAGTCCTCAAGTCGTCGGCAATGCCTTTGTGGAGCAATATTATCATATTCTGCATCAATCTCCAGACTTGGTTCACAGATTCTATCAGGATTCAAGTCTCTTAAGCAGATCCGACAGCAATGGTGTGATGAAGACTGTAACGACTACAAAAGCAATCAATGAAACAATTGTTTCCCTGAACTATGAAGATTGTACAGCAGAAATAAAAACTGCTGATGCTCAGGAGTCCTATGAGAAAGGTGTCATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAACGTGAGAAGGAAGTTCGCGCAGACATTCTTTTTGGCTCCACAAGATAAAGGATATTATGTCTTAAATGACGTCTTTAGGTACATTGAGGAGAATGATGCCCCACAGTTAAATTCTGCTTCAATAAATGTCACCAATGAAAATTCTGAGGCAGTGCACATACCAAAATCAGATGATGTGCACCCTTCGGAACATATTGTGGAAGACCCTGCAACCTCTGCAGAGGGTGAAAAACTTAATAATGGTGTGGAAGTTTATCATCCTCAGGACAACAAGGAAGAAGGTTCGGTTGTTGATGAAGAGGTTGTCATACCGCCTACTGATTTAAGTGAGAATGATGTTGTTACTATTCATGATTCAACTTCTGCAGTCCAGGATGATGCACAAAAGACATCATATGCATCAATTGTAATGAAAAGTAAAACAGCATCTGGCCGTGTCTATGTTCCCAGCCGAGCTGCAAGAGTGGCATCTGCTAAATCCAATGAACAAAGGCACGCTCCCACAAAATCTACTCCTGGGCCCGAGGCATTTGCTCCTAGTAGTGACAGTGCACCAGGGAGTAGTGATGTTCCTGAAGCTGAAGGTCATTCCATATACATACGGAACTTGCCATTTAATGCAACAATTGAACTTCTTGATGAGATTTTTAAGAAATTTGGTCGTATTAAACATGGTGGAGTCCAAGTAAGAAGCAGTAAGCATGGTTTCTGTTTTGGCTTTGTTGAATTTGAGGAACTGAGTTCTGTGCAAAGTGCACTTAAGGCTTCACCCATCACTGTTGGTGAGCGACAGGCTGTTATTGAGGAAAAGATATCCACTACACGAGTCAGCGATGGTGGAAGAGGGAGGTACCCTTCAGGAAGAGGTGGTTTCCGAAACGAGGGTTTCCGGGGGCGTGGGAGATTTGGTGGTGGACGAGGTTATGGAAGAAATGAATTCAGAAACCAAGGGGAATTCTCTGGACGACCTAGGAGTTCTCATCGGCCAAGTCAAAATGGAGGTGGACGGGGCGGAGGCGGACGTCATGGTGCGGGAAACCATAATGTTACACCAACTACTTCAGTGTGA 1386 0.4394 MAMQEANPTSAPSPQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTKAINETIVSLNYEDCTAEIKTADAQESYEKGVIVLVTGCLTGKDNVRRKFAQTFFLAPQDKGYYVLNDVFRYIEENDAPQLNSASINVTNENSEAVHIPKSDDVHPSEHIVEDPATSAEGEKLNNGVEVYHPQDNKEEGSVVDEEVVIPPTDLSENDVVTIHDSTSAVQDDAQKTSYASIVMKSKTASGRVYVPSRAARVASAKSNEQRHAPTKSTPGPEAFAPSSDSAPGSSDVPEAEGHSIYIRNLPFNATIELLDEIFKKFGRIKHGGVQVRSSKHGFCFGFVEFEELSSVQSALKASPITVGERQAVIEEKISTTRVSDGGRGRYPSGRGGFRNEGFRGRGRFGGGRGYGRNEFRNQGEFSGRPRSSHRPSQNGGGRGGGGRHGAGNHNVTPTTSV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3100 461 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Tpr5g3100 461 SMART rrm1_1 303 374 IPR000504 GO:0003723
Tpr5g3100 461 CDD RRM_SF 304 361 - -
Tpr5g3100 461 MobiDBLite consensus disorder prediction 259 298 - -
Tpr5g3100 461 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 450 IPR039539 -
Tpr5g3100 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 361 IPR000504 GO:0003723
Tpr5g3100 461 Gene3D - 6 137 - -
Tpr5g3100 461 MobiDBLite consensus disorder prediction 382 461 - -
Tpr5g3100 461 MobiDBLite consensus disorder prediction 267 293 - -
Tpr5g3100 461 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 450 - -
Tpr5g3100 461 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Tpr5g3100 461 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Tpr5g3100 461 Gene3D - 265 421 IPR012677 -
Tpr5g3100 461 CDD NTF2 13 135 IPR018222 -
Tpr5g3100 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 387 IPR000504 GO:0003723
Tpr5g3100 461 MobiDBLite consensus disorder prediction 424 438 - -
Tpr5g3100 461 SUPERFAMILY RNA-binding domain, RBD 295 408 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3100 Tpr-Chr5 53801033 53807123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3100 K24983 - gmx:100801253 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3100 5 53801033 53807123 Tpr5g3100 5 53801033 53807123 ECH