Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3040 ATGAGCTCCATCGCTCTCAAATCCTTCATCACCCTCCGTCAACCCTCACCGGAAACCACCCACTTCTCCTTCCGACCAAAACCCATTACTCACCGCCGCAAATTCACTGTCGTTGCAGCAGCAAACAGCCAAAAACTCAATGGCAGAAACCTCCGTGTCGCCGTCATCGGCGGTGGTCCAGCAGGTGGTGCAGCAGCAGAAACACTAGCAAAAGGTGGCGTAGAAACCTTCCTCATTGAAAGAAAAATGGACAACTGTAAACCATGTGGTGGAGCCATACCTCTTTGCATGGTAGGTGAATTTGACCTACCATTAGACATCATAGACCGTCGTGTCACAAAGATGAAGATGATTTCTCCGTCGAATGTCGCCGTCGACATTGGTAGAACTCTTAAGTCTCATGAGTATATTGGTATGGTGAGACGTGAGGTTCTTGATGATTATCTTAGGAACAGAGCTAAGGAAAATGGGGCGAATATTATAAATGGGTTGTTTTTGAAAATGGATATTCCTAAGGAGAAGAATTCACCTTATGTTCTTCATTATTCTTCTTATGATGGAAAAACTGGTGGGGTTGGTGAGAAATGTACTTTGGAAGTTGATGCTGTTATTGGTGCTGATGGAGCTAATTCTAGAGTTGCTAAGTCTATTGATGCTGGTGATTATGAATATGCTATTGCTTTTCAGGAGAGGATAAAGATTCCGGATGACAAAATGGCTTATTACGAGGATCTTGCAGAGATGTATGTGGGGGACGACGTTTCTCCCGATTTCTATGGTTGGGTATTTCCAAAATGTGACCACGTAGCTGTTGGCACCGGCACCGTGACACACAAGGGAGACATCAAGAAGTTCCAACTAGCAACAAGGAAAAGAGCCGAGGACAAGATCTTAGGAGGAAAGATCATCCGTGTGGAGGCTCACCCTATACCAGAACATCCAAGGCCACGAAGATTATCAGGAAGGGTCGCGCTCGTGGGCGACGCAGCTGGCTACGTGACCAAATGTTCCGGAGAAGGAATCTATTTTGCAGCCAAGAGTGGGAGAATGTGCGCAGAGGAAATCGTGCAGGGTTCAGCGAACGGGAAGAGGATGGTAGAAGAAAGTGATTTGAGGAAGTATTTGGAGAAATGGGACAAGACTTATTGGCCTACTTACAAAGTTTTGGATATTCTTCAGAAGGTGTTTTATAGGTCCAATCCTGCTAGGGAAGCATTTGTGGAAATGTGTGCTGATGAATATGTGCAGAAGATGACATTTGATAGTTATTTGTACAAGACTGTTGTGCCGGGGAATCCATTGGACGATATCAAGTTGGCAATCAACACCATTGGAAGCTTGGTTAGGGCTAATGCTCTAAGGAGGGAGATGGACAAACTTAATGTATGA 1389 0.4507 MSSIALKSFITLRQPSPETTHFSFRPKPITHRRKFTVVAAANSQKLNGRNLRVAVIGGGPAGGAAAETLAKGGVETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKSHEYIGMVRREVLDDYLRNRAKENGANIINGLFLKMDIPKEKNSPYVLHYSSYDGKTGGVGEKCTLEVDAVIGADGANSRVAKSIDAGDYEYAIAFQERIKIPDDKMAYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEEIVQGSANGKRMVEESDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVVPGNPLDDIKLAINTIGSLVRANALRREMDKLNV* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3040 462 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 39 461 - -
Tpr5g3040 462 PANTHER OS01G0265000 PROTEIN 39 461 - -
Tpr5g3040 462 TIGRFAM ChlP: geranylgeranyl reductase 51 449 IPR011774 GO:0045550
Tpr5g3040 462 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 221 IPR023753 GO:0016491
Tpr5g3040 462 Gene3D - 50 461 IPR036188 -
Tpr5g3040 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 52 74 - -
Tpr5g3040 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 199 214 - -
Tpr5g3040 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 335 - -
Tpr5g3040 462 TIGRFAM GG-red-SF: geranylgeranyl reductase family 53 355 IPR011777 GO:0016628
Tpr5g3040 462 SUPERFAMILY FAD/NAD(P)-binding domain 51 433 IPR036188 -
Tpr5g3040 462 TIGRFAM BchP-ChlP: geranylgeranyl reductase 52 449 IPR010253 GO:0015979|GO:0015995|GO:0045550
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3040 Tpr-Chr5 53334093 53337032 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3040 K10960 - gmx:100779933 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3040 5 53334093 53337032 Tpr5g3040 5 53334093 53337032 ECH