Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3039 ATGGCAGCATCAGCTACTTTTACTATTGGAACTGCCCAAACAGGGAGGTCACTTCCTCAATCAAACTCTTTTGGTTTGAAAATCAATTCTCAGGTTAATTTTAAGACCTTCTCTGGTCTCAAGGCCATGTCATCTCTAAGATGCGAGTCTCAATCATCTTTCTTTGGCAACGAAACTTGTGCTGCCCTGCGTGCAACTTTTGCACCCAAAGCTCAAAAGGAAAACCAAAACCTCACCCGAAATGTGCAGCCTCAGGCATCCTACAAAGTGGCGGTTCTCGGTGCTGCAGGAGGAATTGGTCAGCCATTGGCACTTCTCATCAAGATGTCCCCTTTGGTTTCCGACCTGCATCTTTATGATATTGCCAATGTTAAGGGAGTTGCTGCTGATATCAGTCATTGCAACACTCCTTCAAAGGTTTTGGATTTCACAGGTGCTTCTGAGTTAGCAAATTGTTTGAAAGGTGTGGATGTTGTTGTTATACCTGCTGGTGTTCCTAGGAAACCCGGCATGACTCGTGATGACCTTTTCAACATCAATGCCGGTATAGTCAGGGACTTGGTCACTGCTGTTGCAGATAATTGCCCCGGTGCTTTTATTCACGTTATCAGTAACCCGGTGAACTCTACAGTTCCTATTGCTGCTGAAATTCTGAAACAAAAGGGTGTTTATGATCCTAAAAAGCTTTTTGGTGTTACTACACTTGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAAAAAGAACCTGAGGCTAATTGATGTAGATGTTCCTGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTCTTGTCAAAGACGAGACCCTCAGCGAATTTCACTGATGAAGAAATTGAGGCGCTAACTGTTAGGATTCAAAATGCTGGAACTGAAGTTGTTGAGGCTAAGGCTGGTGCAGGGTCTGCTACTTTGTCAATGGCTTATGCAGCAGCTAGATTTGTTGAATCATCTCTTCGTGCACTTGATGGTGATGCTGATGTGTATGAGTGCTCATTTGTACAGTCAGATCTGACTGACCTTCCGTTTTTTGCTTCAAGGGTGAAGATTGGAAGGAAAGGAGTTGAGGCTTTGATTCCAACCGATCTCCAAGGGTTGAGTGAGTACGAGCAGAAGGCTTTGGAAGCACTTAAACCAGAACTTAAGGCTAGCATTGAAAAGGGGATTGCTTTTGCTCAAAAGCAAACTGTTTCTGCTTAA 1221 0.4414 MAASATFTIGTAQTGRSLPQSNSFGLKINSQVNFKTFSGLKAMSSLRCESQSSFFGNETCAALRATFAPKAQKENQNLTRNVQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSKVLDFTGASELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVTAVADNCPGAFIHVISNPVNSTVPIAAEILKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTRPSANFTDEEIEALTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSFVQSDLTDLPFFASRVKIGRKGVEALIPTDLQGLSEYEQKALEALKPELKASIEKGIAFAQKQTVSA* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3039 406 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 23 406 - -
Tpr5g3039 406 Gene3D - 233 404 IPR015955 GO:0003824|GO:0016616
Tpr5g3039 406 SUPERFAMILY LDH C-terminal domain-like 232 399 IPR015955 GO:0003824|GO:0016616
Tpr5g3039 406 Pfam lactate/malate dehydrogenase, NAD binding domain 89 231 IPR001236 GO:0016491
Tpr5g3039 406 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 233 398 IPR022383 GO:0016616
Tpr5g3039 406 PANTHER MALATE AND LACTATE DEHYDROGENASE 23 406 - -
Tpr5g3039 406 Gene3D - 86 232 - -
Tpr5g3039 406 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 89 400 IPR010097 GO:0006099|GO:0030060
Tpr5g3039 406 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 232 IPR036291 -
Tpr5g3039 406 CDD MDH_glyoxysomal_mitochondrial 88 399 IPR010097 GO:0006099|GO:0030060
Tpr5g3039 406 ProSitePatterns Malate dehydrogenase active site signature. 232 244 IPR001252 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3039 Tpr-Chr5 53329074 53331684 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3039 K00026 - gmx:100783173 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3039 5 53329074 53331684 Tpr5g3039 5 53329074 53331684 ECH