Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3034 ATGATGATTAACAAGAGTTGTGAAGAAGCATTGGTTTCATTGTTGAGCAAATGCACCACAAATCTCAGAACCACCAAACAAATTCACTCTCATCTCTACATTACAGGCCTTCACACTCACCCTTTCTTCTTCGGCAAACTCCTTCTCCACTGTGCCATCTCCATCTCCGAACATGCTCTCAACTACACTCTCCGTCTCTTCCATCATTTCCCCAACCCCGACACCTTCATGTACAACACCCTCATTCGTTCACTCTCTCACTCTTCCACCCCTCACACTTCCCTTCAACCCTTTATTCAATTACTTCGCCACACCACTCTTAATCCCGACAGCTTCTCATTCGCATTTGTACTCAAAGGGATTGCTAATGACGCTCATTCGAAGAGACCTGGTATTCAGATACATTCTCAGGCTTTCCGTCATGGGTTTGATGATCATATATTTGTTGGAACGACTTTGATTAGTATGTATGCTGAATGTGGGTGTTATCAATCTGCAAGAAAGGTGTTTGATGAAATGTCTCAACCGAATGTTGTTGCGTGGAATGCTGTGATAACTGCTTGTTTTAGGTGTGGGGATGTGGAGGGTGCTTGGGGTTTGTTTCAAAGGATGCCTATTAGGAATTTGACTTCTTGGAATGTGATGCTTGCTGGTTATGTTAAAGCAGGTGAATTTGGGTTGGCAAGAAATTTTTTTTATGAAATTCCGATGAGAGATGATGTTTCTTGGAGTACTATGATTGTTGGGTTTGCTCAAGGTGGTTCTTTTGATGATGCTTTTGGGTTTTTCAGGGAGTTGATGCGGGAGGGAATCAGGCCGAGTGAGGTTAGCCTCACCGGAGTGTTATCTGCTTGTGCACAGGCTGGAGCGTTTGAGTTTGGTAAGATTTTACATGGGTTTATGGAGAAAGCTGGGTTTCTTTGTATTATTTCGGTTAATAATGCTCTCATTGATACCTACTCTAAGTGCGGAAATGTTGCTATGGCTAAGATGGTCTTTCAAAATATGCTGGCGGCAAGGTGCATTGTATCTTGGACATCTATGATAGCAGCACTTGCAATGCACGGTTGCGGAGATGAGGCAATCAGGGTTTTTCATGAGATGGAAGAGTCTGGAGTTAGACCAGACGGTGTCACGTTCATATCTCTCCTCTATGCTTGCAGTCATAGTGGTTTGGTTGAACAAGGGTGTGCTTTGTTTTCTAAGATGAAGAATTTCTATGGAATTGAACCCGCCATTGAGCATTATGGTTGTATGGTTGATCTGTATGGTCGAGCTGCTATGTTGCAGAAAGCCTATGAGTTTATATGTCAGATGCCGATTTCGCCTAATGTAATCATTTGGAGGACCCTCCTTGGGGCTTGTAGCATTCATGGTAATATCGAATTGGCAGAGCTTGTAAAATCAAGGCTTGCTGAAATGGATCCAAACAACTCTGGTGACCATGTACTGCTTTCAAATGTTTATGCGGTTGCGGGGAAATGGAAGGATGTTGCTGGCATAAGAAGAACAATGATTGAACAGAGCATGAAAAAAGCTCCTGGTTGGAGCATGATTGAAATTGACAAGGTCATTTATGGTTTTGTGGCAGGTGAAAAGCCTAACGAGGTTACAGAAGAGGCCCATCAGAAACTGAGAGAAATAATGTTGAGACTCAAAGCAGAAGAAGGTTATGCGCCCCAGGTAAGGAGTGTCTTGCATGATATCGAAGAGGAAGAAAAAGAAGATTCAGTGTCCAAGCACAGTGAGAAGCTTGCTGCAGCTTTTGGAATAGCGAAACTTCCTAAAGGAAGGATTTTAAGAATAGTGAAGAACCTGAGGGTTTGTGGGGACTGCCATACTGTGATGAAGCTGATTTCTAAAGTCTATCAAGTAGAAATCACTGTGAGAGATAGAAGTCGCTTTCACTCGTTCAAAGGTGGGGTTTGTTCCTGCAGAGATTACTGGTGA 1950 0.4303 MMINKSCEEALVSLLSKCTTNLRTTKQIHSHLYITGLHTHPFFFGKLLLHCAISISEHALNYTLRLFHHFPNPDTFMYNTLIRSLSHSSTPHTSLQPFIQLLRHTTLNPDSFSFAFVLKGIANDAHSKRPGIQIHSQAFRHGFDDHIFVGTTLISMYAECGCYQSARKVFDEMSQPNVVAWNAVITACFRCGDVEGAWGLFQRMPIRNLTSWNVMLAGYVKAGEFGLARNFFYEIPMRDDVSWSTMIVGFAQGGSFDDAFGFFRELMREGIRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIISVNNALIDTYSKCGNVAMAKMVFQNMLAARCIVSWTSMIAALAMHGCGDEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMKNFYGIEPAIEHYGCMVDLYGRAAMLQKAYEFICQMPISPNVIIWRTLLGACSIHGNIELAELVKSRLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKAPGWSMIEIDKVIYGFVAGEKPNEVTEEAHQKLREIMLRLKAEEGYAPQVRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEITVRDRSRFHSFKGGVCSCRDYW* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3034 649 Pfam E motif 458 520 IPR046848 -
Tpr5g3034 649 Gene3D Tetratricopeptide repeat domain 236 302 IPR011990 GO:0005515
Tpr5g3034 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Tpr5g3034 649 Pfam DYW family of nucleic acid deaminases 557 649 IPR032867 GO:0008270
Tpr5g3034 649 Gene3D Tetratricopeptide repeat domain 93 235 IPR011990 GO:0005515
Tpr5g3034 649 Gene3D Tetratricopeptide repeat domain 315 621 IPR011990 GO:0005515
Tpr5g3034 649 PANTHER OS01G0913400 PROTEIN-RELATED 15 590 - -
Tpr5g3034 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Tpr5g3034 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Tpr5g3034 649 Pfam PPR repeat 211 236 IPR002885 -
Tpr5g3034 649 Pfam PPR repeat 415 439 IPR002885 -
Tpr5g3034 649 Pfam PPR repeat 314 339 IPR002885 -
Tpr5g3034 649 Pfam PPR repeat 151 174 IPR002885 -
Tpr5g3034 649 Pfam PPR repeat 241 271 IPR002885 -
Tpr5g3034 649 TIGRFAM PPR: pentatricopeptide repeat domain 211 235 IPR002885 -
Tpr5g3034 649 TIGRFAM PPR: pentatricopeptide repeat domain 151 174 IPR002885 -
Tpr5g3034 649 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
Tpr5g3034 649 TIGRFAM PPR: pentatricopeptide repeat domain 179 205 IPR002885 -
Tpr5g3034 649 TIGRFAM PPR: pentatricopeptide repeat domain 314 342 IPR002885 -
Tpr5g3034 649 TIGRFAM PPR: pentatricopeptide repeat domain 343 376 IPR002885 -
Tpr5g3034 649 Pfam PPR repeat family 176 209 IPR002885 -
Tpr5g3034 649 Pfam PPR repeat family 341 388 IPR002885 -
Tpr5g3034 649 PANTHER - 15 590 - -
Tpr5g3034 649 Coils Coil 535 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3034 Tpr-Chr5 53265826 53268938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3034 57 649 Glycoside Hydrolase AT3G49170 34.009 3.62e-117 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3034 - - gmx:106796767 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3034 5 53265826 53268938 Tpr5g3034 5 53265826 53268938 ECH