Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3006 ATGAACACTATGACGACGCCGTTTCAACAAGGACCACCGCAAACGGTGAGAAGATTGGCGGTCGAAGTTGTTGATGCACGAAATCTTCTTCCTAAAGATGGTCAAGGAAGTTCTAGTCCTTATGTTGTGGCGGATTTTGATGGTCAGAGAAAACGAACCACCACCCGGTTCAAAGAGCTTAACCCGGTTTGGAATGAATCACTTGAGTTCATTGTTTCTGACCCGGAAAATATGGAGTTTGAAGAGCTTGAAGTTGAGGTTTATAATGATAAGAAATTTGGGAATGGTAGTGGACGGAAGAATCATTTTCTCGGTAGAGTGAAGCTTTATGGAACTCAGTTTTCAGGTAGAGGAGAAGAAGCTTTGGTTTATTATACTTTAGAGAAGAAGAGTGTTTTCAGTTGGGTTAGAGGTGAAATTGGTCTCAAGATTTATTACTATGATGAGATGTTACAGCAAGAGGAACAACAACAACAACAACAACAACAACAGGAGCAACAACGGCCGCCGGAGGAGGAGCGACACGGTGGTGGTGGTAATGAGCAAGAGAGAAACAGGCCTCCGATGATGGTTGAAGAGGGAAGGGTTTTTCAGGTTTCTGAACAAATGGAGCATTGTGTTCCACTTCCAGATGGTCCTCATTCGCCGCGTGTTGTGGTTATGGAAGAATCACCTTCTCCGGTGGTTCGTGTTCAACAGGATCCACCGTTACCGGAGATGTATGGTCCACCGGAACCTGAAATGCAGTATAATCATCACCAGCCAGAAGTGAGGAAAATGCAGGCAATGAGAAATGATAGAGTGAAGATTATGAAAAGACCGAACGGTGGTGGTGATTATGCTCCGAAAGATATCTCCGGGAAGAAACCAAACGGTGAATCTGAAAGGATTCATCCCTATGATCTAGTTGAACCAATGCAGTATCTGTTTGTTAGAATCGTGAAAGTTCGTGGGCTTAATCCTCCAACTGAAAGCCCATTCGTGAAGGTTCGAACAACAAGTCACTATGTTAGATCGAAGCCCGCTAGTTACCGGCCCAACGAGCCTAACGACTCGCCGGAATGGAACCAGGTGTTTGCTTTGGGTTATAACAAAACCGACGCAACCGGTGCCACGTTGGAGATTTCCGTTTGGGATTCACCAACAGAGCAATTTCTCGGTGGTGTTTGTTTTGATCTTTCAGATGTACCTATTCGAGATTCACCAGATAGTCCTCTTGCTCCACAATGGTACCGTCTCGAAGGTGGCGCCGCTGAACAAAACACCGGTAGAGTCTCCGGTGATATACAGCTTTCCGTTTGGATCGGAACTCAATCTGACGATGCTTTTCCAGAAGCATGGAGTTCAGATGCACCATACGTGGCGCATACTCGTTCGAAGGTTTATCAATCTCCGAAGCTTTGGTATCTAAGAGTTACAGTAATGGAAGCACAAGACCTGAATCTGACTCCGAATCTACCTCCATTAACAGCACCGGAAATAAGAGTAAAGGTTCAATTAGGGTTTCAATCACAGAGAACGAGAAGAGGATCAATGAATCACCACAGCATGTCGTTTCACTGGTACGAAGATCTTCTCTTCGTAGCTGGAGAGCCACTAGAAGATTCCATGGTCCTTCTGGTAGAAGATCGCACCACCAAGGAAGCAGCCTTACTCGGCCACGTGGTAATTCCTCTTACTTCAATTGAACAACGAATAGACGACCGCCACGTGCCTGCCAAATGGTTTCCATTAGAAGGTGGAACCTACTGCGGACGAGTCCACCTACGTCTCTGTTTAGAAGGTGGTTATCACGTGCTTGATGAAGCGGCGCACGTGTGCAGCGATTTCCGTCCCACCGCGAAATCTCTCTGGAAACCACCCGTTGGTATACTTGAACTTGGAATCCTAGGCGCTCGCGGTCTTCTCCCAATGAAATCCAAGGGTCCAGGAAAAGGTTCCACCGATGCGTACTGTGTAGCAAAATACGGTAAAAAATGGGTACGAACACGCACCGTAACAGATAGCTTTGATCCACGTTGGAACGAACAGTACACGTGGCAGGTATACGATCCATGTACAGTCTTGACCGTAGGCGTATTCGACAACTGGCGTATGTTTGCTGACGTGTCAGAAGAAAGACCAGATTGCCGTATAGGAAAAATCCGTATACGAGTCTCTACGCTAGAAAGCAACAAAATCTACACAAGTTCATATCCTTTACTTGTTCTAACTCGAACCGGTTTAAAGAAAATGGGTGAAATCGAGTTAGCGGTTCGGTTCGCATGCCCAAGTTTTATGCCAGACACGTGTGCAGTTTACGGACAACCGTTACTTCCAAAAATGCATTACATCCGTCCACTTGGCGTGGCTCAGCAGGAAGCTCTCCGTGGCGCAGCCACAAAAATGGTGGCGCAGTGGCTGGCGCGGTCTGAGCCACCAATGGGACATGAAGTTGTTCGTTATATGTTGGATGCTGACTCACACGCGTGGAGTATGAGAAAAAGTAAAGCGAATTGGTTTAGAATTGTTGCAGTTTTATCTTGGGCCGTTGGATTAGCTAAATGGTTAGATGATATAAGAAGATGGAAAAATCCAGTTACAACGGTTTTACTTCATATACTTTACTTAGTCCTTGTTTGGTATCCAGATTTAATTGTTCCAACCGGGTTTTTATACGTTGTTTTAATCGGAATCTGGTATTACCGATTCAGACCTAAAATACCTGCTGGTATGGATACAAGATTATCACAAGCCGAAGCTGTTGATCCCGATGAATTAGACGAAGAATTCGACACAATGCCTAGCTCCAAACCACCTGATTTGGTTAGGATTAGGTACGATAGGTTAAGAATGTTGGCTGCGAGGGTGCAAACTGTTTTGGGGGATTTTGCTACACAAGGAGAAAGACTTCAAGCATTGGTTAGTTGGAGAGATCCAAGAGCAACGAAATTGTTCATTGGAGTGTGTTTTGTTGTTGCTATTATACTTTATTCTGTGCCTCCTAAAATGGTTGCTGTGGCTTTAGGATTCTATTATCTTCGTCATCCAATGTTCCGGAATCCTATGCCTCCGGCTAGTTTGAACTTTTTCCGACGACTTCCTAGTTTGTCTGATAGGTTGATGTAG 3108 0.4514 MNTMTTPFQQGPPQTVRRLAVEVVDARNLLPKDGQGSSSPYVVADFDGQRKRTTTRFKELNPVWNESLEFIVSDPENMEFEELEVEVYNDKKFGNGSGRKNHFLGRVKLYGTQFSGRGEEALVYYTLEKKSVFSWVRGEIGLKIYYYDEMLQQEEQQQQQQQQQEQQRPPEEERHGGGGNEQERNRPPMMVEEGRVFQVSEQMEHCVPLPDGPHSPRVVVMEESPSPVVRVQQDPPLPEMYGPPEPEMQYNHHQPEVRKMQAMRNDRVKIMKRPNGGGDYAPKDISGKKPNGESERIHPYDLVEPMQYLFVRIVKVRGLNPPTESPFVKVRTTSHYVRSKPASYRPNEPNDSPEWNQVFALGYNKTDATGATLEISVWDSPTEQFLGGVCFDLSDVPIRDSPDSPLAPQWYRLEGGAAEQNTGRVSGDIQLSVWIGTQSDDAFPEAWSSDAPYVAHTRSKVYQSPKLWYLRVTVMEAQDLNLTPNLPPLTAPEIRVKVQLGFQSQRTRRGSMNHHSMSFHWYEDLLFVAGEPLEDSMVLLVEDRTTKEAALLGHVVIPLTSIEQRIDDRHVPAKWFPLEGGTYCGRVHLRLCLEGGYHVLDEAAHVCSDFRPTAKSLWKPPVGILELGILGARGLLPMKSKGPGKGSTDAYCVAKYGKKWVRTRTVTDSFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADVSEERPDCRIGKIRIRVSTLESNKIYTSSYPLLVLTRTGLKKMGEIELAVRFACPSFMPDTCAVYGQPLLPKMHYIRPLGVAQQEALRGAATKMVAQWLARSEPPMGHEVVRYMLDADSHAWSMRKSKANWFRIVAVLSWAVGLAKWLDDIRRWKNPVTTVLLHILYLVLVWYPDLIVPTGFLYVVLIGIWYYRFRPKIPAGMDTRLSQAEAVDPDELDEEFDTMPSSKPPDLVRIRYDRLRMLAARVQTVLGDFATQGERLQALVSWRDPRATKLFIGVCFVVAIILYSVPPKMVAVALGFYYLRHPMFRNPMPPASLNFFRRLPSLSDRLM* 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3006 1035 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 623 775 IPR035892 -
Tpr5g3006 1035 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 18 164 IPR035892 -
Tpr5g3006 1035 CDD C2D_MCTP_PRT_plant 624 751 - -
Tpr5g3006 1035 Gene3D C2 domain 454 593 IPR035892 -
Tpr5g3006 1035 SMART C2_3c 18 123 IPR000008 -
Tpr5g3006 1035 SMART C2_3c 624 731 IPR000008 -
Tpr5g3006 1035 SMART C2_3c 469 571 IPR000008 -
Tpr5g3006 1035 SMART C2_3c 308 405 IPR000008 -
Tpr5g3006 1035 Gene3D C2 domain 620 758 IPR035892 -
Tpr5g3006 1035 ProSiteProfiles C2 domain profile. 448 576 IPR000008 -
Tpr5g3006 1035 ProSiteProfiles C2 domain profile. 606 732 IPR000008 -
Tpr5g3006 1035 PANTHER BNAA10G16860D PROTEIN 14 1035 - -
Tpr5g3006 1035 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Tpr5g3006 1035 Gene3D C2 domain 14 177 IPR035892 -
Tpr5g3006 1035 Coils Coil 147 167 - -
Tpr5g3006 1035 ProSiteProfiles C2 domain profile. 290 411 IPR000008 -
Tpr5g3006 1035 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 308 453 IPR035892 -
Tpr5g3006 1035 CDD C2C_MCTP_PRT_plant 469 612 - -
Tpr5g3006 1035 CDD C2B_MCTP_PRT_plant 308 437 - -
Tpr5g3006 1035 Pfam Plant phosphoribosyltransferase C-terminal 880 1035 IPR013583 -
Tpr5g3006 1035 Gene3D C2 domain 302 435 IPR035892 -
Tpr5g3006 1035 MobiDBLite consensus disorder prediction 155 189 - -
Tpr5g3006 1035 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 468 614 IPR035892 -
Tpr5g3006 1035 MobiDBLite consensus disorder prediction 167 189 - -
Tpr5g3006 1035 Pfam C2 domain 18 110 IPR000008 -
Tpr5g3006 1035 Pfam C2 domain 623 734 IPR000008 -
Tpr5g3006 1035 Pfam C2 domain 308 412 IPR000008 -
Tpr5g3006 1035 Pfam C2 domain 468 578 IPR000008 -
Tpr5g3006 1035 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 14 1035 - -
Tpr5g3006 1035 CDD C2A_MCTP_PRT_plant 18 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3006 Tpr-Chr5 53024151 53029188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3006 5 1035 Lipid Metabolism Gene Families AT1G74720 70.685 0.0 1550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3006 - - gmx:100783882 1763.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3006 5 53024151 53029188 Tpr5g3006 5 53024151 53029188 ECH