Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3004 ATGACATCGCACTCTGCATTCTCTCAAAGCTTCGTTTTACTTGCGCTACCAAATTATGGTCACAAACAATTGATGGAAAATTCTTATTTCCTGGAGAAATTTCGCAACAATCTTGTTGTTTCCAAATCTCTTCTAGATGACACTGATCTCCTCTTTAAACGAACTTCTCCTCCTCGATTTACATTGTGTTTGGGTTTGGGTAAAGATGCAATTGCATTGGATTATTTGGATCTTCGATCTAAATTTCCTAACTATGGTAAGCCAGATATCTCAATTTTAGGTTCAGCAATTGATGGTGTTATCTGTCGCTATGAAACTTCAAATCATACAAAAATAGTACTCTACAATCCTTATGCAGGAGAATTAAAACCAATCCCTCATACCCCTAAGAAAAATGACCTAGTTGATGTGGAGGGTGCCTATACTCTTCATGGGTTTGGTTATGAGGTTGTTGAAAATGATTTCAAAATTATCTTAATTAGGGCAAGTGTTCCAAAACTCAACTTGGATGATGCTTTTGAGCAGAAAAATGAAATGGCAAAAGCTGTGGAAGAAGAGCTCGAGAAGGCTATTTCAGCATATGGATATGAAATTGTTCAAACACTGATTGTTGATATAGTGCCAGATGAGCATGTGAAACGGGCTATGAATGAAATCAATGCTGGCAAATTGAGGGTGGCTGCAAATGAGAAGGCAGAGGCCGAGAAATTTTTGCAAATTAAGCGAGCTGAGGGTGAGGCTGAGTCTAAATATCTCTCTGGACTGGGTATTGCTCGCCAACGTCAAGCCATTGTAGATGGTTTGAGAGACAGTGTGATTGGATTTTCAGTTAATGTACCAGGGACAACTGCTAAAGATGTCATGGATATGGTCCTTGTCACTCAGTACTTCGACACTATGAAAGAAATTGGTGCTGCCTCCAAGTCTTCTGCTGTGTTCATTCCACACGGACCTGGTGCTGTTCGCCATGTCGCTAGCCAAATTCGTGATGGACTTCTCCAGGGTTCTGTATCTCATGAGTAG 1023 0.4037 MTSHSAFSQSFVLLALPNYGHKQLMENSYFLEKFRNNLVVSKSLLDDTDLLFKRTSPPRFTLCLGLGKDAIALDYLDLRSKFPNYGKPDISILGSAIDGVICRYETSNHTKIVLYNPYAGELKPIPHTPKKNDLVDVEGAYTLHGFGYEVVENDFKIILIRASVPKLNLDDAFEQKNEMAKAVEEELEKAISAYGYEIVQTLIVDIVPDEHVKRAMNEINAGKLRVAANEKAEAEKFLQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVIGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRHVASQIRDGLLQGSVSHE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3004 340 CDD SPFH_like_u4 160 332 - -
Tpr5g3004 340 Coils Coil 169 193 - -
Tpr5g3004 340 Gene3D Band 7 domain 149 221 IPR036013 -
Tpr5g3004 340 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 159 337 - -
Tpr5g3004 340 SUPERFAMILY Band 7/SPFH domain 159 220 IPR036013 -
Tpr5g3004 340 Pfam SPFH domain / Band 7 family 160 236 IPR001107 -
Tpr5g3004 340 PANTHER SPFH/BAND 7/PHB DOMAIN-CONTAINING MEMBRANE-ASSOCIATED PROTEIN FAMILY-RELATED 159 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3004 Tpr-Chr5 53018036 53019494 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3004 - - vvi:100245034 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3004 5 53018036 53019494 Tpr5g3004 5 53018036 53019494 ECH