Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2980 ATGATGATGACGACGACGACGAAGAGAGCAAGAACAACAACAAAGGTACAAAACATGTTCATCTCTTTATGTAGACAAAGATCCTTTCACATTCTCATCATCATCGCTGTTTTCTATGTTCTTCTTTTCACTCTTGAAATCCCTTTCGTTTTCAACAAAACCGCCGTCACTCGTTCCGAAAGAAACGCTTTAGAACAACAACAACAGCTTCAACCGAGTCAGATAACTCAACTCACTCGCACCCGAAAAAATCATAATTTGATTCTATCTGGATTGGTACTAAACGACGCCGCATTTGATTCCGAAGTTTATCAATCAGCGTGTCAAGTTGGTAAAAGGGTTTGGGAAGAACTTCAATTAGCGAAAACCCCAGTTCAAAATCAAAACGGTGTCGTTTTGAAACCGGAGAATTTAACCGGGTTATGTCCTCGTTCGGTTTGGGTTACCGGGTCGGATTTTGTTGGGAATGGTAGTTTGATGGTGATTCCTTGTGGGTTGACTTTAGGGTCACATATAACGGTTGTTGGGAAACCGTTGAGAGATAGGGATGGGGAAAAGTCTCAGTTTGTGATGGAATTGCAGGGTTTGAAAACTGTTGAAGGTGAAGAGCCACCTAGGATATTGCATTTCAATCCTAGGTTGAAAGGTGATTGGAATGGTAAACCTGTTATTGAGCTTAATACTTGTTATAGGATGCAGTGGGGTACTTCTTTGCGTTGTGATGGTTGGAAATCTAGGGCTGATCAAGATACCGTTGATGGACTGGTGAAGTGTGAGAAGTGGATTGGGGGAGAATCAGGAGATGATAGGCAAGCAGTGGAGTCGAAATCAGAATGGTGGTTGAAGAGACTCATAGGTCGGACAAAAAAAGTATCAGTTGATTGGCCATTCCCATTTAACGAGAACAAGCTATTTGTTCTTACTCTTAGCGCTGGATTGGAGGGGTATCATTTTAATGTTGATGGGAGGCATGTGGCCTCTTTTCCTTATCGCACTCAGGGCTTTACTCTTGAGGATGCTACTGGACTCACTGTAAAAGGAAATATTGATATCCATTCTATATTTGCTGCCTCCTTGCCTTCAACTCATCCTAGTATTTCGCCACAGCAGCACCTTGATTTTTCAACCAGATGGCGTGCCCCACCACTACCTGAATTTGGCGTGGAACTGTTCATCGGCATCCTGTCAGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGAAAGTCATGGATGCAGAATAGCCTTATCAAATCTTCTGAAGTGGTTGCTCGTTTCTTTGTGGCACTGCACCATAAAATAGAAATTAATTCAGAGTTGAAGAAGGAAGCAGAATTTTTCGGAGATATTGTTATCGTTCCTTACATGGATAACTATGACCTCGTTGTGTTGAAAACAGTGGCTATATGTGAATATGGGGTTCATACAGTAGCTGCAGGGAACATCATGAAAGGTGATGATGACACATTTGTGAGAGTGGACGCTGTTATAAACGAAATAAGGAATGTTCCGGATTCTATGAGCTCTTATATTGGGAATATAAATTATTACCACAAACCCTTGCGCCATGGTAAATGGGCTGTGACATATGAGGAGTGGCCAGAAGAGGATTACCCACCATATGCTAATGGGCCGGGGTATATTCTGTCTTATGATATTGCAAGCTACATTGTTTCTGAATTTGAGAAGCATAAATTAAGGTTGTTCAAAATGGAAGATGTGAGTATGGGAATGTGGGTAGAGAAATTTAACAGCACAAAACCGGTACATTATTCGCATAGCTTAAAGTTCTGCCAGTTTGGGTGTATAGAAGGCTATTACACAGCTCATTACCAATCTCCAAGGCAGATGATGTGCCTTTGGGATAAATTGCAGCGGCATACAAATCCTCAATGCTGCAACATGAGATGA 1911 0.4197 MMMTTTTKRARTTTKVQNMFISLCRQRSFHILIIIAVFYVLLFTLEIPFVFNKTAVTRSERNALEQQQQLQPSQITQLTRTRKNHNLILSGLVLNDAAFDSEVYQSACQVGKRVWEELQLAKTPVQNQNGVVLKPENLTGLCPRSVWVTGSDFVGNGSLMVIPCGLTLGSHITVVGKPLRDRDGEKSQFVMELQGLKTVEGEEPPRILHFNPRLKGDWNGKPVIELNTCYRMQWGTSLRCDGWKSRADQDTVDGLVKCEKWIGGESGDDRQAVESKSEWWLKRLIGRTKKVSVDWPFPFNENKLFVLTLSAGLEGYHFNVDGRHVASFPYRTQGFTLEDATGLTVKGNIDIHSIFAASLPSTHPSISPQQHLDFSTRWRAPPLPEFGVELFIGILSAGNHFAERMAVRKSWMQNSLIKSSEVVARFFVALHHKIEINSELKKEAEFFGDIVIVPYMDNYDLVVLKTVAICEYGVHTVAAGNIMKGDDDTFVRVDAVINEIRNVPDSMSSYIGNINYYHKPLRHGKWAVTYEEWPEEDYPPYANGPGYILSYDIASYIVSEFEKHKLRLFKMEDVSMGMWVEKFNSTKPVHYSHSLKFCQFGCIEGYYTAHYQSPRQMMCLWDKLQRHTNPQCCNMR* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2980 636 SMART Gal_bind_lectin_2 162 356 IPR001079 GO:0030246
Tpr5g2980 636 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 158 357 IPR001079 GO:0030246
Tpr5g2980 636 Gene3D - 158 355 - -
Tpr5g2980 636 Pfam Galactoside-binding lectin 159 355 IPR001079 GO:0030246
Tpr5g2980 636 SUPERFAMILY Concanavalin A-like lectins/glucanases 160 355 IPR013320 -
Tpr5g2980 636 Pfam Galactosyltransferase 403 583 IPR002659 GO:0006486|GO:0016020|GO:0016758
Tpr5g2980 636 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 66 636 IPR002659 GO:0006486|GO:0016020|GO:0016758
Tpr5g2980 636 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 17 59 IPR002659 GO:0006486|GO:0016020|GO:0016758
Tpr5g2980 636 Gene3D - 387 630 - -
Tpr5g2980 636 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 17 59 - -
Tpr5g2980 636 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 66 636 - -
Tpr5g2980 636 CDD GLECT 162 355 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2980 Tpr-Chr5 52799357 52803181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2980 18 636 Glycosyltransferase AT1G74800 60.811 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2980 K20843 - gmx:100800292 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2980 5 52799357 52803181 Tpr5g2980 5 52799357 52803181 ECH
Tpr5g2980 5 52799357 52803181 Tpr5g2980 5 52799357 52803181 PCT