Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2968 ATGTCGTCACCTCAAAACATAAAACAAAAGGTATTCACATGTCTAACCAAACTCTCCGACCGCGACACTCACTCCCTCGCCGCCACCGAACTCATTACAATTGCTCGGAGCCTCGATACAACCACCGTACCAGTTTTCCTCTCTTGCATGTACTCCACCGACGCTTCCGACAAATCTCCGGTTCGAAAGCAATGTGTTCAACTCTTTGGATTTCTCTCAGAAACACACGGTAACGCTCTTTCACCTTACCTTTCGAAAATCATCGCCAACGTAATTCGTCGCCTCCGTGATTCGGACTCGTCGGTCCGATCCGCATGCGTGAATTCCGTTTCAGCATTAGCTTGCCACGTCACGAAGCAACCGTTTCTTTCGTTTCTAAAACCGTTATCAGAAGCTCTGTTCACGGAGCAGGATCAGAACGCGCAAATTGGAGCTGCGCTTTGTCTAGCTTCGGCGATCGATGGAGCTCCGGATCCGGACTCGGCTCGGCTGGCAAAGCTGTTACCGAAGTTCCAGAAATTGCTTAAACGTGAAGTGTTTAAGGCGAAACCGGCGCTGTTGACGCTGATCGGAAGCGTGGTTGAAGCCGGTGGCGCTTCTGGCCAAGCTTCTTTGAAAAATTTGGTTCCGTGTTTGGTTGAATCGTTGAGTAACCGCGATTGGGCGGTGAGGAAGTCTGCGGCGGAGACACTGCTGGTGTTGGCCAATGTTGAGAGAGAATTCTTGCCGGAATTTAAGTCTGAATGTTTGAAAGTTTTTGAGAATCGACGATTTGATAAGGTAAAATTGGTTCGTGAAGTTATGAATCAGATGTTGGAAGCTTGGAAGCATATCCCTGATGTTTCAGATGAATTTTCCCCACCTCCTAGATGGCAATCGTCTTCGAAAGAGAATGCAAGTGATGGGCGATATCCTCCGGTCTCGCAAAATTCATGTAATCCTGGTTCGGTAATGGCGAATCTGCGAAGAAAATCTGCTCCTGCTGGCAGATTCAGTCTACCAGATAGTTCTTCTGCTAGCAATGGCAAGAATGTGAGTGCTTTAAGTAGTAACAAGAGAAGGAGTTCGGTTGTTTCACGAAAACTAAACCAGAAGAATTGGGATGTTCAAGTTGCCATGGCTGATCAGGGTGATCTCGAGGAGATGAATGAAAATAAAACTCCTTTGGAAATGAACCGGGCACTTTTAAATAAAAATTCCGATGATAAAATGAAAAGGCACGGTGGTTCCAAAGCTGGATCTCGTGTTGTTCCATATCATGAAGAGAGTCATGACTCAGTTCCTGTCAGTAATGTCCCCAAAGATCTTTTTAAGAATGACAAAGAGAGCGAAGAATTATCTTTGATCCGCAACCAGTTACAGCAAATTGAGAAGCAACAGTCCAGTCTACTTGATCTTTTGCAGAAATTCATTGGAAGCTCACAAAATGGAATGCGATCTTTAGAAACCCGTGTTCATGGCCTTGAGTTGGCATTGGATGATATCTCTTATGATTTGGCTGTATCAAATGGAAGGATGAGTAATTCTAATGTCCCTCGCAATTCATGTTGCTTGCTACCTGGAGCAGAATTTTTGAGCTCCAAATTCTGGAGGAAATCTCAGGGCCAGTATTCATCCCCACGATTCTCTCGACGTGGTGGTGCTCCATCACTTGCTGCCATGCACTATACAGCTGGCAGAAATGCTGAAACTAACTTTACAACCCAAAGATTCCGACTTGATGGAGGTTTTATCACTAATCCTCTGGCAGAGGTACACACTAATTCAAGGGATTTTGCTTGA 1782 0.454 MSSPQNIKQKVFTCLTKLSDRDTHSLAATELITIARSLDTTTVPVFLSCMYSTDASDKSPVRKQCVQLFGFLSETHGNALSPYLSKIIANVIRRLRDSDSSVRSACVNSVSALACHVTKQPFLSFLKPLSEALFTEQDQNAQIGAALCLASAIDGAPDPDSARLAKLLPKFQKLLKREVFKAKPALLTLIGSVVEAGGASGQASLKNLVPCLVESLSNRDWAVRKSAAETLLVLANVEREFLPEFKSECLKVFENRRFDKVKLVREVMNQMLEAWKHIPDVSDEFSPPPRWQSSSKENASDGRYPPVSQNSCNPGSVMANLRRKSAPAGRFSLPDSSSASNGKNVSALSSNKRRSSVVSRKLNQKNWDVQVAMADQGDLEEMNENKTPLEMNRALLNKNSDDKMKRHGGSKAGSRVVPYHEESHDSVPVSNVPKDLFKNDKESEELSLIRNQLQQIEKQQSSLLDLLQKFIGSSQNGMRSLETRVHGLELALDDISYDLAVSNGRMSNSNVPRNSCCLLPGAEFLSSKFWRKSQGQYSSPRFSRRGGAPSLAAMHYTAGRNAETNFTTQRFRLDGGFITNPLAEVHTNSRDFA* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2968 593 Coils Coil 439 459 - -
Tpr5g2968 593 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 4 591 IPR033337 GO:0005874|GO:0008017
Tpr5g2968 593 Pfam HEAT repeat 208 236 IPR000357 GO:0005515
Tpr5g2968 593 SUPERFAMILY ARM repeat 5 273 IPR016024 -
Tpr5g2968 593 MobiDBLite consensus disorder prediction 329 361 - -
Tpr5g2968 593 MobiDBLite consensus disorder prediction 287 313 - -
Tpr5g2968 593 MobiDBLite consensus disorder prediction 284 313 - -
Tpr5g2968 593 Gene3D - 3 399 IPR011989 -
Tpr5g2968 593 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 4 591 - -
Tpr5g2968 593 MobiDBLite consensus disorder prediction 331 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2968 Tpr-Chr5 52680811 52684027 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2968 - - gmx:100789197 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2968 5 52680811 52684027 Tpr5g2968 5 52680811 52684027 ECH
Tpr5g2968 5 52680811 52684027 Tpr5g2968 5 52680811 52684027 PCT