Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2967 ATGGTTTCCGATTCAGTCGCCGCCGTTCCGATTCCCTCCGCCGCGAACACTAAGAACCCTGGCAAAAAGAAGAGGACCAATAGGTCCGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGTGAACAATGGCTGAATAAAGGTGCGGTCAAGAACAAGGGTTGTAAGGATGGAATGGATGATGATGTTCACGTGCCCCCGTCGTCGGGGAAACATGCTAAGCAAGAATTGGAGAAATTGGAGACTAGGCGTAGAGGTGAAGAGGATGATGTGTTGATCCATCAAGAAAGTGATTCTGAATCGCCGTCGAACAGTCCTGTAAGTGCTAATAGTAGTGTCTTGTGTGGTAATGATTCTGGGACGAATTTTACTGGTAGCAGCAGCAGCGGTGGAAGCACTAGTAGTAGTTCTAGCAGTGGTGGGTGTTGCTCTGGGAATATTACGGAAGAAGAGGAAGATGAGGATGAAGAAGTGGAAGAAGAGGATGATGGATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTGGCCGCCGATGAGAAGCATCAAAACTCTTCTCACAATGAACCTGCTGTGGAAACGGATTCTTCACAATCTCGTGAAGTGACTGGTGGTTCGGGTTTAGGTCATCCGAATTCCAAACCAGGGAGTGGTGGAATGGTTCCTCGGGGTTCTGCTAATGCCAGAGCTTGGAGGGCTGACGATGCTTTTCGCCCTCAGACTTTGCCCAATCTTTCGAAGCAGCATAGTATGCCGAATCCTGACCGGTTTTTTGGAGGAGGGGGTCCCTGGTGTCGCACTTCTGTGCCATCGAATTGTCCAATTTGCTGCGAGGATCTTGATTTAACGGACACGAGTTTTCTTCCGTGCAATTGTGGTTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATTCTTGAGCAAGATGCTCGTTGTCCTGGGTGCAGGAAGCAATATGAGTGTGAACCTATCGAGACAGAAGCAAGTGTGCATGGTGGTAGCCTTACTCTTCGGTTGGCACGTTCTGTTAGCATGATCGAAAGGTCTTGA 1047 0.489 MVSDSVAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLNKGAVKNKGCKDGMDDDVHVPPSSGKHAKQELEKLETRRRGEEDDVLIHQESDSESPSNSPVSANSSVLCGNDSGTNFTGSSSSGGSTSSSSSSGGCCSGNITEEEEDEDEEVEEEDDGCLDDWEAVADALAADEKHQNSSHNEPAVETDSSQSREVTGGSGLGHPNSKPGSGGMVPRGSANARAWRADDAFRPQTLPNLSKQHSMPNPDRFFGGGGPWCRTSVPSNCPICCEDLDLTDTSFLPCNCGFRLCLFCHKRILEQDARCPGCRKQYECEPIETEASVHGGSLTLRLARSVSMIERS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2967 348 MobiDBLite consensus disorder prediction 1 227 - -
Tpr5g2967 348 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 346 - -
Tpr5g2967 348 ProSiteProfiles Zinc finger RING-type profile. 273 315 IPR001841 -
Tpr5g2967 348 CDD mRING-HC-C4C4_CNOT4 273 316 IPR039515 -
Tpr5g2967 348 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 16 346 IPR039780 GO:0004842|GO:0030014
Tpr5g2967 348 MobiDBLite consensus disorder prediction 31 96 - -
Tpr5g2967 348 SUPERFAMILY RING/U-box 271 324 - -
Tpr5g2967 348 MobiDBLite consensus disorder prediction 189 206 - -
Tpr5g2967 348 Coils Coil 70 90 - -
Tpr5g2967 348 MobiDBLite consensus disorder prediction 174 188 - -
Tpr5g2967 348 MobiDBLite consensus disorder prediction 147 169 - -
Tpr5g2967 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 330 IPR013083 -
Tpr5g2967 348 Pfam RING/Ubox like zinc-binding domain 273 319 - -
Tpr5g2967 348 MobiDBLite consensus disorder prediction 97 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2967 Tpr-Chr5 52654929 52658661 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2967 - - gmx:100792365 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2967 5 52654929 52658661 Tpr5g2967 5 52654929 52658661 ECH