Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2962 ATGGAATATCAAAGATCCTTTAGCAATGACTCTAATGACATCCGAAATGAGTCAACTACTACTACTACACGTACTCTTTCTTCGCAACACAGCCTCGCATCAGTTCCTTCCCTCAACTCATCAAATTCGCAACAACATCATAATTCTTCCTTCACATGTATCACAACTCTCAAACTCCAAACTTACATATCCTCTTTAACCCTTGCAGGAAAATTCCTCTACACTGGTTCATCTAACAAAGAAATCACGTCATGGAACCTTTCTGATTTTCATTCTCATCCTGAACAATCGATTACTAACACATTAGAATCCGGAAACGGTGCTGTGAAATCCATACTTGTTCATTCTGACAAGCTTTTCACAGCTCACCAAGACAACAGAATCCGCGTTTGGAAAATCACTGTTAACGATAAGAATGAATATCGACAACAAAAGTTTACTCATTTAGCCACACTCCCAACATTCATCGACCGTTTCTCAAAAATATTGATCCCAAAAAACCATGTTAAGATTCGAAGGCACAAAAAATGTACATGGGTTCACCATGTTGATACAGTTTCTTCCCTTGCCTTATCCAAAGACGGAACCTTGTTGTATTCTGTTTCATGGGACAGAACAATCAAGGTTTGGAAAACTAATGACTTCACATGTTTAGAATCAGTTCACAATGCACACGACGATGCAATAAACGCAATCACAGTTTCTAACGATGGATATGTTTACACCGGATCAGCAGATAAAAAAATCAAGGTTTGGAAGAAAGAAAACGGTGAGAAGAAACATTCATTGGTTGATACATTGGAGAAACATAAATCTGGTATTAATGCATTGGCTCTTAACAATGATGGTTCTGTTTTATATTCTGGTGCATGTGATAGATCAATATTGGTATCTGAGAAAGATGAAAATGGTAACTTGGTTGTGATAGGTGCTCTTCGCGGTCACACAAAGTCTATATTGTGTTTGGCTGTGGTTTCTGATTTGGTTTGCAGTGGTTCTGAGGATAAGACAATTCGAATTTGGAGAGGTAATAATGTTGTTAGAGAGTATTGTTGTTTGAGTGTTTTAGAAGGGCATAAAGGTCCAATTAAGTGTCTAACTGCTGTGCTTGATCATTTTCATGACCAATCATCAGAAACATCTTTTCTTATCTATAGTGGTAGTTTGGACTGTGATATTAAGGTTTGGCATGTTTTCGTTCCTCTTTTATAA 1212 0.3729 MEYQRSFSNDSNDIRNESTTTTTRTLSSQHSLASVPSLNSSNSQQHHNSSFTCITTLKLQTYISSLTLAGKFLYTGSSNKEITSWNLSDFHSHPEQSITNTLESGNGAVKSILVHSDKLFTAHQDNRIRVWKITVNDKNEYRQQKFTHLATLPTFIDRFSKILIPKNHVKIRRHKKCTWVHHVDTVSSLALSKDGTLLYSVSWDRTIKVWKTNDFTCLESVHNAHDDAINAITVSNDGYVYTGSADKKIKVWKKENGEKKHSLVDTLEKHKSGINALALNNDGSVLYSGACDRSILVSEKDENGNLVVIGALRGHTKSILCLAVVSDLVCSGSEDKTIRIWRGNNVVREYCCLSVLEGHKGPIKCLTAVLDHFHDQSSETSFLIYSGSLDCDIKVWHVFVPLL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2962 403 SMART WD40_4 95 132 IPR001680 GO:0005515
Tpr5g2962 403 SMART WD40_4 260 299 IPR001680 GO:0005515
Tpr5g2962 403 SMART WD40_4 50 86 IPR001680 GO:0005515
Tpr5g2962 403 SMART WD40_4 214 253 IPR001680 GO:0005515
Tpr5g2962 403 SMART WD40_4 349 397 IPR001680 GO:0005515
Tpr5g2962 403 SMART WD40_4 172 211 IPR001680 GO:0005515
Tpr5g2962 403 SMART WD40_4 305 342 IPR001680 GO:0005515
Tpr5g2962 403 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 403 - -
Tpr5g2962 403 SUPERFAMILY WD40 repeat-like 60 398 IPR036322 GO:0005515
Tpr5g2962 403 Gene3D - 13 156 IPR015943 GO:0005515
Tpr5g2962 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 341 - -
Tpr5g2962 403 MobiDBLite consensus disorder prediction 1 43 - -
Tpr5g2962 403 Gene3D - 168 400 IPR015943 GO:0005515
Tpr5g2962 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Tpr5g2962 403 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Tpr5g2962 403 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Tpr5g2962 403 PRINTS G protein beta WD-40 repeat signature 329 343 IPR020472 -
Tpr5g2962 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 341 IPR001680 GO:0005515
Tpr5g2962 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 258 - -
Tpr5g2962 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 211 - -
Tpr5g2962 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 262 IPR001680 GO:0005515
Tpr5g2962 403 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 403 IPR045182 -
Tpr5g2962 403 Pfam WD domain, G-beta repeat 264 296 IPR001680 GO:0005515
Tpr5g2962 403 Pfam WD domain, G-beta repeat 223 253 IPR001680 GO:0005515
Tpr5g2962 403 Pfam WD domain, G-beta repeat 180 211 IPR001680 GO:0005515
Tpr5g2962 403 Pfam WD domain, G-beta repeat 310 341 IPR001680 GO:0005515
Tpr5g2962 403 Pfam WD domain, G-beta repeat 351 396 IPR001680 GO:0005515
Tpr5g2962 403 CDD WD40 53 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2962 Tpr-Chr5 52584642 52586577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2962 172 396 Miscellaneous Gene Families AT5G08390 24.675 1.17e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2962 - - gmx:100801906 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2962 5 52584642 52586577 Tpr5g2962 5 52584642 52586577 ECH
Tpr5g2962 5 52584642 52586577 Tpr5g2962 5 52584642 52586577 PCT