Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2960 ATGGAAAAGAAGCGGAAAAGGAATCAAAAGGCGGAGCGCGACGGCGATCGAAAACCAAAATCGGTTCCGGTAGCCGAGAATCTAAAGCAGCAACCATTTCCTTCACACAGTGGACCCACTCCACAAGAATGCCTCGACATACGAGACACACTCTTATCCCTCCACGGCTTACCACCAGAACTCGCCAAATACCGCAAATCGCAATCCACCGACGACACCGTCAATTCAGAACCAACGGAAACCGTTCTCGACGGTTTAGTCCGAACCATACTCTCACAGAACACTACAGAAACAAATTCTCAGAAGGCTTTCGTTTCTCTCAAATCATTATTTCCCACATGGGAACATGTGCATGATGCTGAGACTAAGGATTTGGAGAATGCTATTCGATGTGGTGGTTTAGCACCGACTAAGACTTCGTGTATTAAGAATTTGTTGCGTTGTTTGTTAGAGAGAAAAGGGAAATTGTGTTTGGAGTATTTAAGAGATTTGTCTGTTGATCAAGTTAAAGCTGAACTATCTGTTTTCAAAGGAATTGGTGCCAAAACAGTCTCTTGCGTGTTGCTGTTCAACCTTCAGCTAGATGATTTTCCCGTGGACACTCATATATTTGAGATTGCGAAAACCATTGGTTGGGTACCCGCTGCTGCAGACAGAAACAAGACATACCTTCATCTAAACCAAAGGATCCCAGATGAACTTAAGTTTGACCTAAATTGCCTTCTGTATACTCACGGGAAACTCTGCAGTAAATGCTCCAGTAAAAAGGGCAACAAGCAACAGAAGAAAAAAGAGCAACAGAAGAAATCCAATGACGACTCTTGTCCTTTATTAAATTATTATAAAGAGTTGGTTTGA 858 0.4266 MEKKRKRNQKAERDGDRKPKSVPVAENLKQQPFPSHSGPTPQECLDIRDTLLSLHGLPPELAKYRKSQSTDDTVNSEPTETVLDGLVRTILSQNTTETNSQKAFVSLKSLFPTWEHVHDAETKDLENAIRCGGLAPTKTSCIKNLLRCLLERKGKLCLEYLRDLSVDQVKAELSVFKGIGAKTVSCVLLFNLQLDDFPVDTHIFEIAKTIGWVPAAADRNKTYLHLNQRIPDELKFDLNCLLYTHGKLCSKCSSKKGNKQQKKKEQQKKSNDDSCPLLNYYKELV* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2960 285 Pfam HhH-GPD superfamily base excision DNA repair protein 87 230 IPR003265 GO:0006284
Tpr5g2960 285 SMART endo3end 91 248 IPR003265 GO:0006284
Tpr5g2960 285 MobiDBLite consensus disorder prediction 1 41 - -
Tpr5g2960 285 Gene3D - 199 249 IPR023170 -
Tpr5g2960 285 Gene3D Hypothetical protein; domain 2 76 198 - -
Tpr5g2960 285 CDD ENDO3c 86 246 IPR003265 GO:0006284
Tpr5g2960 285 MobiDBLite consensus disorder prediction 1 23 - -
Tpr5g2960 285 PANTHER - 3 282 - -
Tpr5g2960 285 SUPERFAMILY DNA-glycosylase 78 258 IPR011257 GO:0003824|GO:0006281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2960 K10773 - gmx:100802952 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2960 5 52560845 52564135 Tpr5g2960 5 52560845 52564135 ECH