LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g2959	ATGAAATTGAAAAACAAAACATACAGATCTTACCTACGAGGCTACGACCTGTTCCTTGTCTTTCCCCTTTCAACAACATTTTCAAACCAAGTCCGCGAAACCTCTTTTTTACATCCTATGATTCCTCATCGTTACTATTCCGTATGTCTCCTTATCTTACTCCTCGTACTTTCTACTTTCTCTTTCTCTCACTCACAATCCCATTCCTCTACCAAGAAAAAACGCATGAGAGAAAAAGTTCGCAAGATGTTTCATCATGCTTATGACAACTATATGACTCATGCATTTCCGCATGATGAGCTAAAACCTCTCACGAAAACTTTCACCGATTCCCTAAGCGAGCTGGGAAATTTGAAGCTTGAACGTTTGCCTCAAGATTACAACGGCTCTGCCCTTTCGCTAATTGAATCGCTATCTAGCCTTGTTATTATGGGGAACAATACCGAATTCGAGAAGGGAGTGCGCTGGCTTTCAGAAAATTTAACATTTGATGTTGATGCTCGCATAAATCTGTTTGAGTGCAACATTAGAGTTCTTGGAGGTCTCGTCTCTGCTCATTTACTGGCATCTGATTCTTCAAAGAAGTTACTACAAGGATCTTACAATAATCAGCTACTAGGTCTGGCTGAAGATTTAGGGAAACGTTTTCTACCTGCATTCAATACGCCCACTGGATTACCATATGCATGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTGATTCTTGAAATGGGTGCTTTATCAAAATTGACCGGTGACCCCAGATATGAATCAGTAGCTTTACGAGCCCTCCGTAAGCTATGGAGTATGCAGAGCTCATTAAAATTATTTGGAACCACACTTGATGTGTCAACCGGACAATGGATTGAACATTCTTCGGGAATTGGAGCTGGGGTAGATTCCTTCTATGAATATCTACTTAAAGCCCATATCCTTTTCGGAAAGGAGGACTTTTGGAGAATGTTTCATTCTGCTTATGTTGCTGTGCAAAAGCATTTCAGACACGGCCCCTGGTACCACGAAGCTGATATGAGGACAGGAAGAGCAACTTATTGGCAGCTTACGAGTCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTATTGGGGATATATCTGCTGCTAATTCATCTCACCGCGAGTTCTTCTATGTGTGGAAGAAATTTGGAGTGCTACCAGAGAGGTATTTGCTGGACCATCAGATGCTTCATCCAACTGAAAAATATTATCCATTGCGCCCAGAGTTTGCTGAGTCAACATTCTACTTATATCAAGCTACTAAAGATCCATGGTATCTTGAAGTCGGCGAATTAATAATCAATTCCCTTAATATATACTCTAGAGTAGAAGGTGGGTTTGCAAGCATCAAGGATGTAACAACTATGCAGTTGGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGCAAATATTTATATCTTCTCTTTGATGATTCGTTTTTGCTCAAGAGTAATTACGTATTTACCACTGAAGGTCATCCCCTTCCGGTATTAAGCACTTGGCACGAAGAGCTTCCAGAAACTTATATTCCAACTAATTGGACCACCCTGAAGAAGCAACCAACAAATCGAGCCAGTGCGATGTCTATGCAAGTATGTCCTGCTATGACTTTAAATTCTGGTCAACATATAGAGAGTGCTTGCCACATCTCCGATGTTCGCATTGACCACAGGTGTTTGACTGATGAAGATTGTGGAGTTGATGCAACTACCTGCAGAAGAAGATCATGTAGCATGGCTGGTTATTGTGGGCTATGGCTCGTCATTATTTGA	1833	0.4108	MKLKNKTYRSYLRGYDLFLVFPLSTTFSNQVRETSFLHPMIPHRYYSVCLLILLLVLSTFSFSHSQSHSSTKKKRMREKVRKMFHHAYDNYMTHAFPHDELKPLTKTFTDSLSELGNLKLERLPQDYNGSALSLIESLSSLVIMGNNTEFEKGVRWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKKLLQGSYNNQLLGLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKLTGDPRYESVALRALRKLWSMQSSLKLFGTTLDVSTGQWIEHSSGIGAGVDSFYEYLLKAHILFGKEDFWRMFHSAYVAVQKHFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDISAANSSHREFFYVWKKFGVLPERYLLDHQMLHPTEKYYPLRPEFAESTFYLYQATKDPWYLEVGELIINSLNIYSRVEGGFASIKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFLLKSNYVFTTEGHPLPVLSTWHEELPETYIPTNWTTLKKQPTNRASAMSMQVCPAMTLNSGQHIESACHISDVRIDHRCLTDEDCGVDATTCRRRSCSMAGYCGLWLVII*	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g2959	610	PANTHER	ALPHA-MANNOSIDASE I MNS5	54	608	-	-
	Tpr5g2959	610	PANTHER	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	54	608	IPR044674	GO:0004571\|GO:1904380\|GO:1904382
	Tpr5g2959	610	SUPERFAMILY	Seven-hairpin glycosidases	74	530	IPR036026	GO:0004571\|GO:0005509\|GO:0016020
	Tpr5g2959	610	PRINTS	Glycosyl hydrolase family 47 signature	83	103	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Tpr5g2959	610	PRINTS	Glycosyl hydrolase family 47 signature	168	186	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Tpr5g2959	610	PRINTS	Glycosyl hydrolase family 47 signature	218	237	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Tpr5g2959	610	PRINTS	Glycosyl hydrolase family 47 signature	309	326	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Tpr5g2959	610	PRINTS	Glycosyl hydrolase family 47 signature	366	382	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Tpr5g2959	610	PRINTS	Glycosyl hydrolase family 47 signature	423	447	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Tpr5g2959	610	PRINTS	Glycosyl hydrolase family 47 signature	482	502	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Tpr5g2959	610	Pfam	Glycosyl hydrolase family 47	83	516	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Tpr5g2959	610	Gene3D	-	65	527	IPR012341	GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g2959	Tpr-Chr5	52554889	52560022	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g2959	39	606	Glycoside Hydrolase	AT1G27520	76.049	0.0	924

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g2959	K10084		-	gmx:100793674	1004.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr5g2959	5	52554889	52560022	Tpr5g2959	5	52554889	52560022	ECH