Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2952 ATGGGTGACAATAAACGCAAAAGAGGTCGCAAACCCAAAAACCCTTCTCCCGAAACCCTAGAAACCACAACCACCGCCCCAACCACCACAATCGCCGCCGAACCTTCTCCTTCTAACAACGACGATGATTTCTCAATCGGAAACGTTGAACTCATCGACAACAACACCGCTTCTTCCCAACTCGGCCGGGGTCGTGGACGCGGACGCCCTAAAAAACCCGCCACCGTTCCCGACAAGGCTCCTGCCGGACGCCGTGCCACCCGTGGTGTCGACAGTAACGGTGCTGTCCCTGTCCCGACCGTTCCGGTTGAAGTCGGGGGCGCTACTCCTATGGATGCAGATCCTATATGGGAAAGCTTATCGGCGAGAGTGATGCCGTCGATGGATTCGGTGGTGAAAGTGTTCTGTGTACATACAGAACCGAATTTTTCGTTACCATGGCAGAGGAAGAGACAATATAGTTCTAGTAGTAGTGGGTTTGTGATAAGTGGGAAGAGGGTTCTTACTAATGCACATTCTGTTGAGCATTATACTCAGGTGAAGCTTAAGAAACGTGGCTCTGATACTAAGTATTTGGCTACTGTTCTTGCTATTGGAACTGAGTGTGATATTGCCATGCTTACCGTTGATGATGATGAGTTCTGGCAAGGGATGTCGCCTGTGGAGTTTGGGGAGTTGCCTACCCTTCAAGATGCAGTAACTGTTGTGGGCTACCCAATTGGGGGAGACACTATCTCTGTGACCAGTGGTGTTGTATCACGTATTGAGATTTTATCTTATGTCCATGGTTCCACAGAACTTCTAGGTTTACAGATAGATGCTGCTATAAATTCTGGAAATTCTGGTGGACCTGCATTTAATGGTAAAGGAAACTGTGTGGGGATAGCATTTCAGTCCCTCAAACATGAAGATGTGGAAAATATAGGTTATGTCATTCCAACGCCAGTTATCATGCATTTCATCAAGGATTATGAGAAGAATGGGGGATATACTGGGTTCCCTATTCTCGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTACGAATGTCAGTGGGCATGAAATCAGATCAGAAAGGTGTGCGTATCAGAAGAATTGATCCTACTTCTCCTGAATCTAAGGTTTTAAAACCGTCAGATGTTATCCTTAGCTTTGATGGGATTGATATTGCCAATGATGGAACAGTCCCATTTCGCCATGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAAATATACTGGCGATGACGCAGCAATCAAAGTATTGCGGAATTCAAATGTTCTCAAATTCAATATTAAACTTGATGGTCATAGAAGGCTTATTCCAGCACACAGCAAGGGCAAGCCTCCCTCATATTATATTATTGCAGGATTTGTTTTTTCAACTGTTTCAGTTCCTTATCTTCGTTCTGAGTACGGAAAGGACTATGAGTATGAAGCTCCAGTGAAGATTTTGGATAAACTGCTGTATGCAATGCCACAATCACCAGATGAACAACTTGTTGTGATTTCACAGGTGCTGGTGGCTGACATCAACATTGGATACGAAGAGATTGTTAACACCCAGGTCGTTGGTTTTAATGGTAAACCAGTGAAAAACCTTAAGAGCTTGGCTGCTATGGTAGAGAATTGTGATGATGAGTATCTAAAATTTGATTTAGATTATGAACAGATAGTAGTCCTTCGCACGAAGACTGCAAAAGCTGCCACGCTAGATATTCTTGCAACACACTGCATTCCATCAGCAATGTCTGAAGATCTTAAGTCATAG 1776 0.4443 MGDNKRKRGRKPKNPSPETLETTTTAPTTTIAAEPSPSNNDDDFSIGNVELIDNNTASSQLGRGRGRGRPKKPATVPDKAPAGRRATRGVDSNGAVPVPTVPVEVGGATPMDADPIWESLSARVMPSMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVISGKRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGELPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNGKGNCVGIAFQSLKHEDVENIGYVIPTPVIMHFIKDYEKNGGYTGFPILGVEWQKMENPDLRMSVGMKSDQKGVRIRRIDPTSPESKVLKPSDVILSFDGIDIANDGTVPFRHGERIGFSYLISQKYTGDDAAIKVLRNSNVLKFNIKLDGHRRLIPAHSKGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKILDKLLYAMPQSPDEQLVVISQVLVADINIGYEEIVNTQVVGFNGKPVKNLKSLAAMVENCDDEYLKFDLDYEQIVVLRTKTAKAATLDILATHCIPSAMSEDLKS* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2952 591 Pfam PDZ domain 443 588 IPR041517 -
Tpr5g2952 591 SUPERFAMILY PDZ domain-like 359 441 IPR036034 GO:0005515
Tpr5g2952 591 Gene3D - 112 214 IPR043504 -
Tpr5g2952 591 PANTHER - 4 590 - -
Tpr5g2952 591 PANTHER PROTEASE DO-LIKE 9 4 590 - -
Tpr5g2952 591 MobiDBLite consensus disorder prediction 16 62 - -
Tpr5g2952 591 Pfam PDZ domain 345 436 IPR001478 GO:0005515
Tpr5g2952 591 CDD PDZ_serine_protease 334 434 - -
Tpr5g2952 591 Gene3D - 329 440 IPR036034 GO:0005515
Tpr5g2952 591 SUPERFAMILY Trypsin-like serine proteases 128 328 IPR009003 -
Tpr5g2952 591 MobiDBLite consensus disorder prediction 1 96 - -
Tpr5g2952 591 Gene3D - 441 591 IPR046449 -
Tpr5g2952 591 PRINTS HtrA/DegQ protease family signature 159 171 IPR001940 GO:0004252|GO:0006508
Tpr5g2952 591 PRINTS HtrA/DegQ protease family signature 187 207 IPR001940 GO:0004252|GO:0006508
Tpr5g2952 591 PRINTS HtrA/DegQ protease family signature 229 253 IPR001940 GO:0004252|GO:0006508
Tpr5g2952 591 PRINTS HtrA/DegQ protease family signature 266 283 IPR001940 GO:0004252|GO:0006508
Tpr5g2952 591 PRINTS HtrA/DegQ protease family signature 375 387 IPR001940 GO:0004252|GO:0006508
Tpr5g2952 591 Pfam Trypsin-like peptidase domain 158 295 - -
Tpr5g2952 591 Gene3D - 215 326 IPR043504 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2952 Tpr-Chr5 52485730 52491855 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2952 K25897 - gmx:100791040 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2952 5 52485730 52491855 Tpr5g2952 5 52485730 52491855 ECH