Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2949 ATGTCATCTCCAAGCAAGAGACGAGAAATGGATGTAATGAAATTGATGATGAGTGATTATACAGTGGAGACAATAAATGATGGACTCACTGAATTCAATGTGGAGTTTCATGGTCCTAAAGAAAGCCTTTATGAAGGTGGAGTCTGGAAAATTCGTGTTGAACTACCTGATGCATATCCATACAAATCCCCTTCAATTGGCTTCGTGAACAAAATATACCACCCGAATGTTGATGAGTTATCTGGCTCTGTATGCTTGGACGTCATTAACCAATCATGGAGTCCAATGTTCGATCTTCTAAATGTCTTTGAAGTGTTTCTACCACAACTCTTGCTTTATCCAAATGCTTCAGATCCTTTGAATGGCGATGCAGCGTCGTTAATGATGAAGGATAGAAAGCTGTATGACCAAAAAGTTAAAGAATATTGTGAGCGGTATGCAAAGAAGGAAAACATTTGCAACAATGGTACTGGTGATGATGAAGAGAGTGATGATGAAGACATAAGTGAAGCAGAAACTCAATCAAGTGATGATGAAATTCCTGGTCGTGCTGATCTTTAA 561 0.3868 MSSPSKRREMDVMKLMMSDYTVETINDGLTEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDRKLYDQKVKEYCERYAKKENICNNGTGDDEESDDEDISEAETQSSDDEIPGRADL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2949 186 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Tpr5g2949 186 Gene3D Ubiquitin Conjugating Enzyme 1 159 IPR016135 -
Tpr5g2949 186 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Tpr5g2949 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 185 - -
Tpr5g2949 186 CDD UBCc 7 143 IPR000608 -
Tpr5g2949 186 MobiDBLite consensus disorder prediction 157 174 - -
Tpr5g2949 186 SMART ubc_7 4 148 - -
Tpr5g2949 186 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Tpr5g2949 186 MobiDBLite consensus disorder prediction 152 186 - -
Tpr5g2949 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 185 - -
Tpr5g2949 186 SUPERFAMILY UBC-like 4 149 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2949 Tpr-Chr5 52472651 52478181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2949 4 117 Miscellaneous Gene Families AT3G17000 23.770 1.64e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2949 K10576 - gmx:100527526 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2949 5 52472651 52478181 Tpr5g2949 5 52472651 52478181 ECH