Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2947 ATGACGATTCCTTCATCGGAGGAAACACCCACCACACCCACCGTTCATGTCAACAACATACCACAAACTGTCACCGCCAAAGATCTCCTCATTTACCTAGAATCCGCCATTGGTCGTTCTTCCATCTTCGCCCTCGAAATCTTCAGTGAGCACCACAACTGGAAATCTCGTGGCACAGGTCGAGTTCAGTTCGAAACATTCGAAGCAAAATCAAAAGCCCTAACTCTCTCTAACAATGAAAAGCTTCTCTTCAAATCCCATTTCCTTCGTTTATCTGATTCCAAAGATGACATTGTTGCTAGACCTTACCTTGCTCGTAATCGTCTCAACAATTGTACCCTTCATGCTGGTTTTCCCATTGGACCTGATTGCATGAGCGTTTTAGAGACATGGGAAGGTGTTAAAGGTTGGGTTTTGCCGGAAAGGAGCAGACTTGAATTCTGGGTCACTCATGGTGGTGACTGTTACAAGCTTGAGATTCAGTTTGAAAATATTCTGGAGTCTGTTGGGTATTGTGCTGGTGATTCAAAACCAAATGCACTTCTCTTGAAGCTGAAATATGCGCCAAGGATATATCAACAAAAGAAGGGGCCAGATGTAGATGACAAGTTTACTGGTAATAGGTATAGATTTTGTAAGGATAATTTTGGGTTTATGTGGGTGCGTACCACTGACTTCACAATTTCAAAGTCAATTGGGCACTCAACCTCATTTTTTTGGGAAATTGTGGAAGAATCGTTTGATTCTGATGTTTTTCGAAGTTTGCCGTTGTACAAAGAGAATTTGATGGATCTATGTCTGGAAGAGGGGGGTATATTCTGTTCTCCAAACGAAACAGTTCCTCTTGTTAAGTGTCATTTGGATTCCAAGTTACCTTACGAGTCTCTTTTCCAATTGAATTCTCTTGTCCACACCCACAAGATTAGTCTTGGTTCGGTGAATGATGAGTTGATTGACTTGTTGGCAAGCTTGGATGAAGAAACTAAGGCTGTGATTTTTCAAAAATTGCACAAGATGAATTCCACTTGTTACGAGCCTCTAAAATATGTGAAGACTCAATTACATGTGCTTAGTATAAAGAATAAAAGTGTTCGCCCATCACAACACAAAAGGTTGATGGATAATAACATAATGAGTTGTCATCGAGCTTTGATTACCCCATCAAAGATTTATTGCCTTGGTCCCGAGCTTGAAACCTCAAATCATGTGGTAAAGCATTTTGCGAAATATGCTTCAGACTTCATGAGGATTACGTTTGTTGAAGAGGATTGGAGCAAGCTTCCAGTCAATGCATTATCAACCAGTTTGCAAAAGGGAATCAAGGCAAGGCCTTTGAGAACTGAAATATATAAGAGGGTACTGTCTATTCTTCAAGATGGTATTGTAATTGGATCAAAAAGATTTGAGTTTCTTGCTTTCTCTGCTAGTCAACTGCGGTCCAATTCTGTTTGGTTATTTGCTTCTAATGATGAAGTGACAGCAGCAGATATTAGAGAATGGATGGGAAGCTTCAATAACATCCGCAGTGTCTCTAAATGTGCTGCAAGAATGGGCCAGCTGTTCAGCTCTTCAAGGCAAACATTTGAAATGTCCCCTCAAGATGTGGAATTAATTCCTGATATTGAGATCAACTCCAATGGTACAAGCTACTGTTTCTCAGACGGTATTGGGAAAATTTCCCTATCTTTTGCAAGGCAACTTGCTCAAAAGCTGAAATTGGATGAAAATCGGATTCCTTCAGCATTTCAAATTCGGTATGGTGGATATAAAGGTGTCATTGCTGTTGACCGCCATTCTTTTAGAAAGCTATCATTGCGTAAAAGTATGCTCAAGTTTGAATCCAAAAACAGGATGCTTTGCGTCACTAAATGTAGCGAGTCAATGCCTTGCTTTCTAAATCGAGAGATTATATCCCTGTTGTCTACATTAGGGATAAAAGATGAGGCACTTTTGGCATTGCAAGAGGATCAATTGCAGTTGCTAGGAAAAATGTTGACTGATAGGGATGCGGCTTTGGATGTTTTGGAAAGTTTAAGTGGAGCTGATTCAAAAAGCATTCTAGTGAAGATGCTACATAAATTTTATGAGCCAAACGGCGAGCCTTACCTATCAATGATGCTCAAGGCTCATTATGCATACCAGTTATCTGATTTGAAAAGCAGATGCCGAATATTTGTTCCCAAGGCCCGAGTTTTGATAGGCTGCTTGGATGAAACTGGTCTTTTGAATTATGGCCAAGTATTTGTCCGCATAACTAAGACAAAAAATAAGGAAAAATTTGGAGATGAAAACTTAAGGGAAGTGGATGGTGATGATAGCACATGGATTATAGTAGGTAAGGTGGTGGTGACAAAAAACCCTTGTCTTCACCCAGGTGATATCAGAGTCCTTGATGCTGTCTACAATGAAGAATTAGAAGAAAAGGGTTTAAGGGATTGCCTTGTATTTCCACAAAAAGGACCTAGGCCTCATCCAAATGAGTGCTCTGGAGGTGATCTTGATGGGGATTTATTTTTCATAAGCTGGGACAAAGATCTAATCCCATCTCAAACTGTTGATCCAATGGACTACACGGGAAGAAGGCCTCGTATAATGAACCATAACGTGACACTGGAGGAAATACATCAATTTTTTGCTGATTACATGATCAACGATACTTTGGGTGCTATCTCCACCGCACATTTGGTTCACGCTGACCGTGAACCAGATAAGGCAAGGAGTAGAAAATGTCTGGAGTTGGCTGAGCTTCATTCCATGGCTGTTGATTTTGCAAAGACTGGAGCTCCTGCAGAAATGCCTAGAGTTTTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGGTTTGAAAAGCCTATGTATATATCCAAAGGGGTACTAGGAAAACTCTATCGTGCCTTAGTTGATTCAACTTTGCAAGTAAGGTCTAATACTGTCTTGTCAGAGAAGTTTACCGAAGAAGCATATGATCATCAACTTGAAGTTAATGGTTTTGAGGTCTTTCTTGAGACTGCCTTAAGTCACAGAGAAATGTATGCTCAGAAGATGAGCTCTTTAATGAGCTTCTATGGTGCAGAGACTGAAGATGAAATGCTAACCGGTAACTTGCAAACCCGTGCTTTTTATTTGCAGCGTGATAACAGGAGATATGGAGATATGAAGGATCGAATTCTAATCTCAGTAAAGGATCTTCAGCGGGAAGCTAAAGAATGGTTTGAAAGTGATTGTCAGCCGCATGAATATCCGCTTATGGCATCTGCATGGTATCATGTGACCTATCACACCAAATATTACCGTGAAAACTCCACTTTTTTAAGCTTTCCATGGATCGTCGGTGACATTTTGTTGCATATCAAGTCTGCAAATAGCTCCTCTGTCCCATAA 3381 0.4046 MTIPSSEETPTTPTVHVNNIPQTVTAKDLLIYLESAIGRSSIFALEIFSEHHNWKSRGTGRVQFETFEAKSKALTLSNNEKLLFKSHFLRLSDSKDDIVARPYLARNRLNNCTLHAGFPIGPDCMSVLETWEGVKGWVLPERSRLEFWVTHGGDCYKLEIQFENILESVGYCAGDSKPNALLLKLKYAPRIYQQKKGPDVDDKFTGNRYRFCKDNFGFMWVRTTDFTISKSIGHSTSFFWEIVEESFDSDVFRSLPLYKENLMDLCLEEGGIFCSPNETVPLVKCHLDSKLPYESLFQLNSLVHTHKISLGSVNDELIDLLASLDEETKAVIFQKLHKMNSTCYEPLKYVKTQLHVLSIKNKSVRPSQHKRLMDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAKYASDFMRITFVEEDWSKLPVNALSTSLQKGIKARPLRTEIYKRVLSILQDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDEVTAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMSPQDVELIPDIEINSNGTSYCFSDGIGKISLSFARQLAQKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFRKLSLRKSMLKFESKNRMLCVTKCSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLGKMLTDRDAALDVLESLSGADSKSILVKMLHKFYEPNGEPYLSMMLKAHYAYQLSDLKSRCRIFVPKARVLIGCLDETGLLNYGQVFVRITKTKNKEKFGDENLREVDGDDSTWIIVGKVVVTKNPCLHPGDIRVLDAVYNEELEEKGLRDCLVFPQKGPRPHPNECSGGDLDGDLFFISWDKDLIPSQTVDPMDYTGRRPRIMNHNVTLEEIHQFFADYMINDTLGAISTAHLVHADREPDKARSRKCLELAELHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFEKPMYISKGVLGKLYRALVDSTLQVRSNTVLSEKFTEEAYDHQLEVNGFEVFLETALSHREMYAQKMSSLMSFYGAETEDEMLTGNLQTRAFYLQRDNRRYGDMKDRILISVKDLQREAKEWFESDCQPHEYPLMASAWYHVTYHTKYYRENSTFLSFPWIVGDILLHIKSANSSSVP* 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2947 1126 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 9 1123 - -
Tpr5g2947 1126 PANTHER RNA-DEPENDENT RNA POLYMERASE 9 1123 IPR007855 GO:0003968
Tpr5g2947 1126 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 128 196 - -
Tpr5g2947 1126 Gene3D - 4 100 IPR012677 -
Tpr5g2947 1126 CDD RRM_SF 15 82 - -
Tpr5g2947 1126 Pfam RNA dependent RNA polymerase 385 965 IPR007855 GO:0003968
Tpr5g2947 1126 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 96 IPR000504 GO:0003723
Tpr5g2947 1126 SUPERFAMILY RNA-binding domain, RBD 5 102 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2947 Tpr-Chr5 52464783 52471212 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2947 K11699 - gmx:100808274 1737.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2947 5 52464783 52471212 Tpr5g2947 5 52464783 52471212 ECH