Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2899 ATGTCATCCGCAGTAAGAGATCATAGGATCATTCGCCGAATGACAAGCCTACCACGAAGCTTAATGAGCTTCGTGGGAATAGGAAGAAGAAGAAGAAATCAAAATACAAATTTTCCATTGCAACCTCTAGACACTCCTCAACCACAAAGCTCCTTAGCAACTCCAGACGAGTGGATTTTTCTAGACAACTTTGAGCAACAATATGGCACAAAACATCCCTTCTTTTACGCTTGTCGTTTCATTGAAGCTATGAAGTTAGCAGAACAAGATAAAAAGTTTGTGTTCATGTATCTCCATTCACAAGAACACCCTTTTGCAAACGTGTTCTGCAAGGAAACCTTGTGTTCTGAGCTAGTGACTCAGTTTCTTGATGTGAATTTTGTTTGTTGGGGTGCACTTGCAGATAGAGGAGAGGGTTTGCAAATGGTTGCATCATTGAGACCTTCAAGTTTTCCTTGTTGTGCTGTCATAAGTCCTGCTCCTAATGATGGCATAATTGTGTTGCAACAGCTAGAGGGACCACTTTCACCTGCAGAGCTAGTGGAGATTCTACAAACAACATTGGAAGAACAAGGGTTAGCTTTTGGAAGTGCTAAAGCGAAGCGAGATGAAAAGATCCGAGCAGATCGTAGACTTAGAGAAGAGCAAGATGCTGCATATTTTAAGGCTTTGCAAATAGACAAGGAAAAAGAGAAACTCAAAAGTTTATCTTCAAAAGAGAGAGTTCAGAAGCCAGTGGAAACACAAAACACTAGAAATTATGGGATGTTAAGGAACAATTACGTTGATGTCACTAAATTTCATAACAAAGGAAATGGTTCCACAAGTGAAAAACAAGACAAAGGAAGAATCACAAGTAGTGGAAAGGAGACTCAAGTTGCACAGATACTCATAAGGTTTCCAAATGGAGAAAGAAGAGAACATACATTCCTATGCACAGACAAAATTCAGTCGATTTTTTCATATATTGATTCATTAGGTTTGTCTGGAATTGAGAACTACAGATTGATATCAAATTTTCCAAGAAGAGTTTATGGTGTTGATCAAATGAGAATGACTCTTAAAGATGTTGGCTTGTATCCTAAAGCTAGTTTGTTCTTGGAGCCTTTGTGA 1113 0.3872 MSSAVRDHRIIRRMTSLPRSLMSFVGIGRRRRNQNTNFPLQPLDTPQPQSSLATPDEWIFLDNFEQQYGTKHPFFYACRFIEAMKLAEQDKKFVFMYLHSQEHPFANVFCKETLCSELVTQFLDVNFVCWGALADRGEGLQMVASLRPSSFPCCAVISPAPNDGIIVLQQLEGPLSPAELVEILQTTLEEQGLAFGSAKAKRDEKIRADRRLREEQDAAYFKALQIDKEKEKLKSLSSKERVQKPVETQNTRNYGMLRNNYVDVTKFHNKGNGSTSEKQDKGRITSSGKETQVAQILIRFPNGERREHTFLCTDKIQSIFSYIDSLGLSGIENYRLISNFPRRVYGVDQMRMTLKDVGLYPKASLFLEPL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2899 370 PANTHER FAS-ASSOCIATED PROTEIN 8 369 - -
Tpr5g2899 370 CDD UAS 80 190 - -
Tpr5g2899 370 SUPERFAMILY Ubiquitin-like 287 369 IPR029071 -
Tpr5g2899 370 SUPERFAMILY Thioredoxin-like 54 193 IPR036249 -
Tpr5g2899 370 Gene3D - 288 369 - -
Tpr5g2899 370 SMART 45neu3 59 185 IPR006577 -
Tpr5g2899 370 CDD UBX 296 368 - -
Tpr5g2899 370 Gene3D Glutaredoxin 58 193 - -
Tpr5g2899 370 ProSiteProfiles UBX domain profile. 289 367 IPR001012 GO:0005515
Tpr5g2899 370 Pfam UBX domain 290 368 IPR001012 GO:0005515
Tpr5g2899 370 SMART ubx_3 287 369 IPR001012 GO:0005515
Tpr5g2899 370 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 8 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2899 Tpr-Chr5 52150815 52153071 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2899 K18726 - gmx:100775212 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2899 5 52150815 52153071 Tpr5g2899 5 52150815 52153071 ECH