Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2895 ATGAAGGAAACAATAAGGTACTTAGCAGGCATTGCAGGGCCTAGTGGTTTTGGCTCAAATTCAACTGCAGAACAAGTCACTCAACATTGCTCTTTTCTACCTTCAAATCTAACTGCTCTCATCACTGGTGCCACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAAAAAGGAGTGAGAGTTGTGGTTGGTGCTAGAGACATGAAAAAAGCTATGAAAGTGAGAGAAAAAATCCAAGAGGAGAGTCCTAATGCTGAGGTTATTCTATTGGAGATTGATCTTAGTTCTCTTGCTTCTGTAAAGAGATTTTGTTCAGAGTTTTTAGCTTTAGATTTGCCTCTTAATATTCTCATAAACAATGCAGGAGTATACTCTCAGGATCTGGAATTCTCTGAAGAGAAAATTGAATTGACATTTGCTACAAATTATTTAGGACATTTTCTGCTGACAAAGATGTTACTAGAGAAAATGATAGATACTGCAAACATGACAGGAATTCAAGGAAGAATAATAAATGTTTCTTCAGTAATTCATAGCTGGGTGAAAAGATCTTGCTTTAGTTTTAAAGACATGCTCAGTGGAAAAAATTACAATGGAACACGTGCATATGCTCAATCAAAATTAGCCATGATTCTGCATGTCAAGGAAATGACTAGACAACTAAAGGCAAGGAATGCAAGAGTAACTATTAATGCAGTGCATCCAGGCATTGTGAGGACAGGAATTATAAGAGCACATAAGGGCTTAATACAGGATTCCTTCTTTTTCATTGCATCAAAGCTGCTCAAAACAATATCACAGGGTGCATCAACGACATGTTACGTTGCTCTAAGCCAACAAATAGAAGGGGTGAGTGGGAAATACTTTACTGATTGCAATGAGAGTACCTGCTCAAGTTTTGCAAAGGACGAATCAGAAGCTAAAAAACTATGGAACAATACAAATACCTTACTTCACAAACGCCTAAGGGCATGTTTGGATTGGCGGTGA 996 0.3785 MKETIRYLAGIAGPSGFGSNSTAEQVTQHCSFLPSNLTALITGATSGIGAETARVLAKKGVRVVVGARDMKKAMKVREKIQEESPNAEVILLEIDLSSLASVKRFCSEFLALDLPLNILINNAGVYSQDLEFSEEKIELTFATNYLGHFLLTKMLLEKMIDTANMTGIQGRIINVSSVIHSWVKRSCFSFKDMLSGKNYNGTRAYAQSKLAMILHVKEMTRQLKARNARVTINAVHPGIVRTGIIRAHKGLIQDSFFFIASKLLKTISQGASTTCYVALSQQIEGVSGKYFTDCNESTCSSFAKDESEAKKLWNNTNTLLHKRLRACLDWR* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2895 331 Gene3D - 33 325 - -
Tpr5g2895 331 CDD retinol-DH_like_SDR_c_like 38 313 - -
Tpr5g2895 331 PANTHER RETINOL DEHYDROGENASE 4 325 - -
Tpr5g2895 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 298 IPR036291 -
Tpr5g2895 331 Pfam short chain dehydrogenase 38 179 IPR002347 -
Tpr5g2895 331 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Tpr5g2895 331 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Tpr5g2895 331 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
Tpr5g2895 331 PRINTS Glucose/ribitol dehydrogenase family signature 205 224 IPR002347 -
Tpr5g2895 331 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Tpr5g2895 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
Tpr5g2895 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 178 IPR002347 -
Tpr5g2895 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 224 IPR002347 -
Tpr5g2895 331 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2895 Tpr-Chr5 52101736 52104714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2895 17 293 Acyl Lipid Metabolism Gene Families AT3G46170 25.952 1.80e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2895 - K11153 gmx:100819058 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2895 5 52101736 52104714 Tpr5g2895 5 52101736 52104714 ECH
Tpr5g2895 5 52101736 52104714 Tpr5g2895 5 52101736 52104714 PCT