Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2880 ATGGATCCCAATCCGGGGACTCACCCCATTCTCTCCTACGTCATGTCTCGTCTCCAATCTCTCAGCCCCAAAGCTCGTTCCCAATCTAAACGCGAATTCGACGTCGAAAAACCACACTCCCCATCATCATTATCTTCCCCATCTGCAATCGTAGGCCAAATGCCAAATCTAATTGATCCCAAAATAATCTCCGCCATGACCCGTGCCATTTCCGATGTCTCGCAAGCCCGATCAGTCCTAAAACAAATCGGCGATCGACCTACTCACGAAGAAATCGACATTGCCAAAGCCAAATTGATCGATCTCGATGTTCAATTGTCTCGTCAAATGGAAGAGATCGCGACGCTCCAACGACCTCCGGAGATCGACGAACAACAATGGCAGATTCATATTACTGAAAGAGAGACGAAATGTAGAGAATCTATTGATAATGAGAGACGTATTTATAAGTCGCTGTTGCAAAAAGATGAAATGTTTGATGCTTATGAGAAGCTTTTGAAGAATGCTGAGTCAAGGCTTGTGAAGATTTATGAAGATGATGGTGATGTTGGTGAGAGTAGTAATGGTGGTGATGTGGCTGAGGATGGTGAATGTCATGAAAGTATTGCGAGGATATTGCTGGAGGCGCGTGAAAAAGATATTGATCGCGTGGAACTTGTTGGGAAACGGTTGAGAAAGTTGCCGGAGGAATTTTGCAACATTGATTCATTGCTTGTGCTCAACCTCAACACTAATCAGCTTTCGGTGATTCCTGACACAATAGCTGCGTTGCAAAATCTCGAGGAGCTTAATATCTCTTCAAATCTTTTGGAGTCACTTTCAGATTCAATTGGCTTGTTACAAAAGTTGAAAATCCTCAATGTCTCTGGAAATAAGTTGAGTTCCCTTCCTGATTCCATCAGTCAGTGCAGATCATTGGTTGAGCTGGATGCAAGCTTTAACAGTCTGACATATTTGCCAACAAACATTGGATACGAATTACAGAATTTACAGAAGCTTTTGGTTGGTTTAAACAAGATACGATCCCTTCCCTCATCCGTTTGTGAGATGAAGTCATTGCGCTATCTAGATGCTCGTTTTAATGAACTACACGGGCTTCCTATTGCAATTGGGAAATTGACTAGTCTTGAAGTTCTCAACCTCAGTAATAACTTCAGTGACCTTCAAGAACTACCAGAGACATTTGGTGATCTGAGTAGCCTCAGAGAATTGGACCTTAGTAACAATCAAATTCAAGCACTTCCTGATACATTTGGTCGCCTTGATAGTTTAACCAAGCTAAACTTGGACCAGAACCCTATTGAATTGCCACCTATGGAGGTTGTAAATGAAGGTATCCTAGCCATCAAGTCTTACATGTCTGAGAGGTGGTTAGATATATTGGCAGAGGAAGAGAAGAAAAACACACATGAATTGCAAGAAGGACAGAGTGGATGGGTAACGCGAAGTACCTCCTGGTTGAAGAACGTTTCTGAAAATGTAACTGAGTATATCGGAAATACCATGTCCCCCAAAAGTGCCAGATCTCCCAAATCTCCCATAACTCCTAGAACTCCCAAAAGTAATTATCTTGATCAGCCACTCTGA 1587 0.4247 MDPNPGTHPILSYVMSRLQSLSPKARSQSKREFDVEKPHSPSSLSSPSAIVGQMPNLIDPKIISAMTRAISDVSQARSVLKQIGDRPTHEEIDIAKAKLIDLDVQLSRQMEEIATLQRPPEIDEQQWQIHITERETKCRESIDNERRIYKSLLQKDEMFDAYEKLLKNAESRLVKIYEDDGDVGESSNGGDVAEDGECHESIARILLEAREKDIDRVELVGKRLRKLPEEFCNIDSLLVLNLNTNQLSVIPDTIAALQNLEELNISSNLLESLSDSIGLLQKLKILNVSGNKLSSLPDSISQCRSLVELDASFNSLTYLPTNIGYELQNLQKLLVGLNKIRSLPSSVCEMKSLRYLDARFNELHGLPIAIGKLTSLEVLNLSNNFSDLQELPETFGDLSSLRELDLSNNQIQALPDTFGRLDSLTKLNLDQNPIELPPMEVVNEGILAIKSYMSERWLDILAEEEKKNTHELQEGQSGWVTRSTSWLKNVSENVTEYIGNTMSPKSARSPKSPITPRTPKSNYLDQPL* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2880 528 PRINTS Leucine-rich repeat signature 283 296 - -
Tpr5g2880 528 PRINTS Leucine-rich repeat signature 398 411 - -
Tpr5g2880 528 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 503 - -
Tpr5g2880 528 Pfam Leucine rich repeat 259 316 IPR001611 GO:0005515
Tpr5g2880 528 Pfam Leucine rich repeat 375 434 IPR001611 GO:0005515
Tpr5g2880 528 Coils Coil 159 179 - -
Tpr5g2880 528 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 3 503 - -
Tpr5g2880 528 SMART LRR_bac_2 303 322 - -
Tpr5g2880 528 SMART LRR_bac_2 257 276 - -
Tpr5g2880 528 SMART LRR_bac_2 350 369 - -
Tpr5g2880 528 SMART LRR_bac_2 398 417 - -
Tpr5g2880 528 SMART LRR_bac_2 234 253 - -
Tpr5g2880 528 SMART LRR_bac_2 280 299 - -
Tpr5g2880 528 SMART LRR_bac_2 327 346 - -
Tpr5g2880 528 SMART LRR_bac_2 373 394 - -
Tpr5g2880 528 SMART LRR_typ_2 304 326 IPR003591 -
Tpr5g2880 528 SMART LRR_typ_2 373 397 IPR003591 -
Tpr5g2880 528 SMART LRR_typ_2 327 350 IPR003591 -
Tpr5g2880 528 SMART LRR_typ_2 257 279 IPR003591 -
Tpr5g2880 528 SMART LRR_typ_2 234 256 IPR003591 -
Tpr5g2880 528 SMART LRR_typ_2 280 303 IPR003591 -
Tpr5g2880 528 SMART LRR_typ_2 398 421 IPR003591 -
Tpr5g2880 528 ProSiteProfiles Leucine-rich repeat profile. 282 303 IPR001611 GO:0005515
Tpr5g2880 528 SUPERFAMILY L domain-like 216 434 - -
Tpr5g2880 528 ProSiteProfiles Leucine-rich repeat profile. 400 421 IPR001611 GO:0005515
Tpr5g2880 528 MobiDBLite consensus disorder prediction 498 528 - -
Tpr5g2880 528 Gene3D Ribonuclease Inhibitor 206 464 IPR032675 -
Tpr5g2880 528 MobiDBLite consensus disorder prediction 21 49 - -
Tpr5g2880 528 ProSiteProfiles Leucine-rich repeat profile. 259 280 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2880 Tpr-Chr5 51943549 51948353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2880 229 416 Receptor kinase-like Gene Family AT4G28490 35.678 7.61e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2880 - - gmx:100782818 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2880 5 51943549 51948353 Tpr5g2880 5 51943549 51948353 ECH
Tpr5g2880 5 51943549 51948353 Tpr5g2880 5 51943549 51948353 PCT