Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2875 ATGAATAAGGATTTTGCTTGTCTTAAAACCTTCTTTAAGCAAATGCTTAAGGAAAATGAAAGGCATATTGTTTTTAAAAAGGTGGTTGGTGTTATTTTAGGATCTGAATGGAGTGATGAGGTTATGAATGAACTTGTTGAGCTTAAAATTCGGCTTTCCGATAGTTTTGTAATAAGGGTTTTGAAAGAGCTTCGAGATTGTCCTTTAAAGGGTTATGAATTCTTTCGTTGGGTTGGGAAGCAATCTGGTTATCAACATAATACGGTGACTTACAATGCAGTTGCTAGAGTTCTTGCAAGGCCTGGTTCAATTGAGGAGTTTTGGAGTGTTCTTGAAGAGATGAAAAGTGTGAATCATGAATTGGATATCGATACTTATATGAAGATAACAATGCAGCTTGTAAGGAATCATATGATGGAGGATGCTGTCAAGCTTTATGAGCATATGATGGATGGTTCATATGTGCCATCGGCTCATGATTGCTGTGTTCTTTTAAACGCCATTGCTACAAGCGATTCGTCAAATTATGATCTTGTTTTCAGGGTGGCCAAGAAATATGAATCTGCAGGGGATACTCTCACAAAGGAAATCCACGATGGAATACACAGGTGTTTGACAAATGCTGGGAAATTTGATGAAGCTGAAAATATTGTTAAGACGATGAGAAATGCTGGCTATGAACCTGATAATACTACCTACAGTCAAGTGGTTTTTGGACTTTGTAAGATGAAGAAGGTTGAAGAAGCATGTAAGGTGCTGGAGGAGATGGAGTCTAGTGGCTGCATCCCTGATGACAAAACTTGGTCCATCTTGATCCAAGGGCATTGTGCTGCCGATGAATTAGATAAGGCATTACTTTGTTTAAGTAAGGTGATTGAAAAAGACTGCAATGCAGATGCTGGTGCGATAGCCGCTCTGATTGATAGTTTTCTTAGTCAAGAGAAAATAGACGATGCATACAAGTTTCTTGTAGAGATGGTTAGAAATTTCTCCACTTCTCCTAGGCAATGTAAGTATGAGAAAATGATTGAAAACCTGTTAGGAATCGGAAAATTTGAAGATGCACTTGACCTTCTCTGTTTGATGAGGAAACACAAGTACCCTCCATTCAACAAACCCATTGTGCAGTATGTTTCAAAGTATGGGACGGTGGAGGATGCTGTGAAATTCCTGAAGGCATGGAGAAAGGGAAGTCCTCGGTCCCATTCAGCCTATCTTCATGTTTTTGAATCTTTCAAAGCAGAAGATAGACTCTCCGAGGTAAAAGATCTATTGTGCAAGTATCCTTTTCAAATAAGAAGACGTAAAAAAGTCAGTGAATTTACTTCTTTATGTGAAGACTCGGATGCTGCTAGTAGTGCTACTTGA 1368 0.3882 MNKDFACLKTFFKQMLKENERHIVFKKVVGVILGSEWSDEVMNELVELKIRLSDSFVIRVLKELRDCPLKGYEFFRWVGKQSGYQHNTVTYNAVARVLARPGSIEEFWSVLEEMKSVNHELDIDTYMKITMQLVRNHMMEDAVKLYEHMMDGSYVPSAHDCCVLLNAIATSDSSNYDLVFRVAKKYESAGDTLTKEIHDGIHRCLTNAGKFDEAENIVKTMRNAGYEPDNTTYSQVVFGLCKMKKVEEACKVLEEMESSGCIPDDKTWSILIQGHCAADELDKALLCLSKVIEKDCNADAGAIAALIDSFLSQEKIDDAYKFLVEMVRNFSTSPRQCKYEKMIENLLGIGKFEDALDLLCLMRKHKYPPFNKPIVQYVSKYGTVEDAVKFLKAWRKGSPRSHSAYLHVFESFKAEDRLSEVKDLLCKYPFQIRRRKKVSEFTSLCEDSDAASSAT* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2875 455 Gene3D Tetratricopeptide repeat domain 40 204 IPR011990 GO:0005515
Tpr5g2875 455 Gene3D Tetratricopeptide repeat domain 205 333 IPR011990 GO:0005515
Tpr5g2875 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Tpr5g2875 455 Pfam PPR repeat 305 329 IPR002885 -
Tpr5g2875 455 Pfam PPR repeat 89 116 IPR002885 -
Tpr5g2875 455 TIGRFAM PPR: pentatricopeptide repeat domain 203 229 IPR002885 -
Tpr5g2875 455 TIGRFAM PPR: pentatricopeptide repeat domain 232 264 IPR002885 -
Tpr5g2875 455 TIGRFAM PPR: pentatricopeptide repeat domain 267 299 IPR002885 -
Tpr5g2875 455 TIGRFAM PPR: pentatricopeptide repeat domain 89 122 IPR002885 -
Tpr5g2875 455 PANTHER OS01G0970900 PROTEIN 1 441 IPR044578 GO:0008380
Tpr5g2875 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Tpr5g2875 455 PANTHER OS01G0970900 PROTEIN 1 441 - -
Tpr5g2875 455 Pfam Pentacotripeptide-repeat region of PRORP 137 293 IPR033443 -
Tpr5g2875 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Tpr5g2875 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Tpr5g2875 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2875 Tpr-Chr5 51913440 51914807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2875 83 377 Glycosyltransferase AT1G05670 23.077 2.56e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2875 - - gmx:100801257 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2875 5 51913440 51914807 Tpr5g2875 5 51913440 51914807 ECH