Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2835 ATGAATTCCAAATGCATATTTTTTCTTATAACAATTTCAACAATATTAGCAATTGCAAATTCAGAAGCATCAGTGAAACCATTGGTGAAAATAGTAAGAGGAAAGAAACTATGTGACAGAGGTTGGGAATGTAAAGGTTGGTCAGTGTATTGTTGCAATGAAACAATTTCTGATTATTTGCAAACATACCAATTTGAGAATTTGTTCTCAAAGAGAAATGATCCTGTTGCACATGCTGTTGGATTTTGGGATTATCATTCTTTTATTACTGCTGCTGCACTTTATCAGCCTCTTGGATTTGGTACTTCTGGTGGAAAACATGGTGGACAGAAAGAAGTTGCTGCTTTTCTTGGTCATGTTGGAAGCAAAACCTCTTGTGGTTATGGAGTGGCTACAGGGGGACCCTTTGCTTGGGGCTTATGCTATAATAAGGAACTAAGTCCTGATAAATTCTACTGTGATGAATACTACAAATTAACCTATCCATGTAGTCCTGGTGCAGCTTACTATGGCCGTGGTGCCATTCCAATTTACTGGAATTACAATTATGGAAAAATTGGAGAAGCCTTAAAAGTGGATCTATTAAACCATCCAGAATACATTGAACAAAATGCAACATTAGCATTCCAAGCAGCACTATGGAAATGGATGACACCACCTGAAAAACACATACCTTCACCACATGATGTTTTTGTTGGAAATTGGAAACCAACAAAAAATGACACATTATCCAAAAGAGTACCTGGATTTGGTGCCACAATCAATATTTTATATGGTGATCAAGTTTGTGGCCAAGGTTCTGAAAATGAATCAATGAATAATATAATTTCTCATTATCTTTATTATCTTGATTTGTTAGGAGTTGGTAGAGAAGAGGCAGGGCCTAATGAAATTCTATCTTGTGCTGAACAAGCTGCTTTTAAACCTTCTGGCTCACCTTCTTCTTCAACAACTTGA 957 0.3647 MNSKCIFFLITISTILAIANSEASVKPLVKIVRGKKLCDRGWECKGWSVYCCNETISDYLQTYQFENLFSKRNDPVAHAVGFWDYHSFITAAALYQPLGFGTSGGKHGGQKEVAAFLGHVGSKTSCGYGVATGGPFAWGLCYNKELSPDKFYCDEYYKLTYPCSPGAAYYGRGAIPIYWNYNYGKIGEALKVDLLNHPEYIEQNATLAFQAALWKWMTPPEKHIPSPHDVFVGNWKPTKNDTLSKRVPGFGATINILYGDQVCGQGSENESMNNIISHYLYYLDLLGVGREEAGPNEILSCAEQAAFKPSGSPSSSTT* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2835 318 Gene3D Endochitinase, domain 2 144 203 - -
Tpr5g2835 318 SUPERFAMILY Lysozyme-like 56 307 IPR023346 -
Tpr5g2835 318 Gene3D - 64 307 - -
Tpr5g2835 318 CDD chitinase_GH19 64 301 - -
Tpr5g2835 318 Pfam Chitinase class I 63 291 IPR000726 GO:0004568|GO:0006032|GO:0016998
Tpr5g2835 318 PIRSF Endochitinase 1 308 IPR016283 GO:0004568|GO:0005975
Tpr5g2835 318 PANTHER CHITINASE-RELATED 10 311 - -
Tpr5g2835 318 PANTHER CHITINASE-LIKE PROTEIN 1 10 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2835 Tpr-Chr5 51497679 51500501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2835 21 307 Glycoside Hydrolase AT3G16920 79.443 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2835 - - gmx:100805300 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2835 5 51497679 51500501 Tpr5g2835 5 51497679 51500501 ECH