Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2768 ATGGAAGCCATGGCCGTGTTTACCGGAAGCAATATCTCTATAACATCATCCTCTCTCCTAAGCACCACCACCAACTCAAATACAACAACAAGAAGAATAAGAATAACCTCTCAATTACGAACCAGTGCCACCCACTTATCTGCATTTCCTTCAAAATCCCATCTTTTTTCATCTTCTTCTACTTCTTCCTATGCCAAAACTATCCGCACCAGAACCGGCACCGAATCCGGCATCTTCCTTCCCCGCTTAATGGCTGCTCTTGAACAAGTTGACCAAACTTACATTATGGTGAAGCCCGACGGCGTGCAACGTGGTCTTGTGGGTGAAATTATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTAACTGGCTTGAAGCTCTTCCAATGTTCAAAAGAATTAGCTGAGGAGCATTACAAGGACCTAAAACAAAAGCCTTTCTTCCCTGCGATGATTGACTACATTACTTCAGGTCCTGTTGTATCCATGGCTTGGGAGGGTATTGGAGTAGTGCCATCAGCACGTAAGCTTATAGGGGCTACAGATCCTCTTCAAGCTGAACCAGGCACGATAAGAGGAGACCTTGCTGTTCAAAGAGGAAGGAATGTTATTCATGGCAGTGACAGTCCTGAAAATGGCCAGCGTGAAATAGCTCTATGGTTCAAGGAAGGCGAATTATGCGAGTGGACTCCTGTCCAAGAACCATGGCTAATAGAGTAA 717 0.4477 MEAMAVFTGSNISITSSSLLSTTTNSNTTTRRIRITSQLRTSATHLSAFPSKSHLFSSSSTSSYAKTIRTRTGTESGIFLPRLMAALEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLKQKPFFPAMIDYITSGPVVSMAWEGIGVVPSARKLIGATDPLQAEPGTIRGDLAVQRGRNVIHGSDSPENGQREIALWFKEGELCEWTPVQEPWLIE* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2768 238 Hamap Nucleoside diphosphate kinase [ndk]. 90 225 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tpr5g2768 238 PRINTS Nucleoside diphosphate kinase signature 93 115 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tpr5g2768 238 PRINTS Nucleoside diphosphate kinase signature 137 156 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tpr5g2768 238 PRINTS Nucleoside diphosphate kinase signature 157 174 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tpr5g2768 238 PRINTS Nucleoside diphosphate kinase signature 178 194 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tpr5g2768 238 PRINTS Nucleoside diphosphate kinase signature 201 220 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tpr5g2768 238 Gene3D - 86 238 IPR036850 -
Tpr5g2768 238 ProSitePatterns Nucleoside diphosphate kinases active site. 201 209 IPR023005 -
Tpr5g2768 238 Pfam Nucleoside diphosphate kinase 92 224 IPR034907 -
Tpr5g2768 238 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 36 237 - -
Tpr5g2768 238 CDD NDPk_I 92 220 - -
Tpr5g2768 238 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 36 237 - -
Tpr5g2768 238 SUPERFAMILY Nucleoside diphosphate kinase, NDK 91 237 IPR036850 -
Tpr5g2768 238 SMART ndk_5 90 227 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2768 Tpr-Chr5 49823168 49826375 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2768 K00940 - gmx:100500478 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2768 5 49823168 49826375 Tpr5g2768 5 49823168 49826375 ECH