Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2753 ATGAACAATAACAATAATCCACCCAAGATTCCGGCGACGGCGCAACCGTCGTTTTTAGGCAGTTCATCAATCGCCGTTAACCCACCACAACCAATTCATCTTCTCACTCAGTCTCATCCCCAAACTCAAGGTTCTTCTTCAACATTCCCCGGTCACTTTCAGCTATCACAACCTCAACCCCATGTCATTGCACAACAACAACCACAATTTCCAAACCCTCGTTCTCACCCTCAAACCCAACTACAACAACAGCAGCAGAAGCAGCAACAATCTGTTAGCCAAATGCATATTAACAATAACACTAATGTGGCTTCTCCTGCAACTGCGGCGACAACTACTACTGCTGCTGCTACAACTACTACATCTGCAAAGCGTGCACATCAGAAGTCGAGTTCGCGTCCACAAGGTTCACCGAGTGGTAATCAAACATCTGCTTTTAAGACTATGGAGTTAACTCCTGCTCCTTTAAGGAAAAAGAGGAATTTACAGGAGAATTTAATACCGGAAAAAGTGGCTAAGCTTGTGCCCGAGTCTGCGATTTATACTCGGTTACTTGAACTTGAGGCTCAGATAGATGCTGTTTTAAATAGGAAAAAGATTGATGTGCAGGAGGCTGTTAAGAATCCTCATTCCGTTAGGAAAACTCTCCGTGTTTATGTGTATAATACATTTTCAAATCAGACAAAATTGGATTCTGGGAAGGTTGGTGGTGTGGAGGAGCCTTCTTGGTCGCTTAGGCTAACGGGAAGGATATTGGAAGAAGTTGGTAAGGATTCTGTTGTGGGAGGGGTTTCGAAAAAGGAAAGTTTGTACCCAAAGTTTTCGGCTTTCTTTAAGAAAATTACGGTGTACTTGGATCAGGGATTCTACCCGGATAATCATGTTATGGTATGGGATAGTGCTCGTTCGTCTGTACAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAGACAAAGAATTTACTGCAGTTATTAGGTTAACAATGAATTACTCGCCTGAGAAGTTTATGGTTTCAACACCGTTGGCTAAAGTTTTAGGGATTGAGTTTGATACCCGTCCTAGGATAATGGCAGCTCTATGGAACTATGTGAAATTCAGGAAGCTACAGAGCCCGAATGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAAAAAGTGTTTGGGGAAGAAAAAATGAAATTTTCATTGGCTTCACAGAAGATATCACAGCATTTGTCACAACCACAGCCTATACACCTGGAGCATAAAATCAAGCTTTCTGGAAATTGTCCTGCTGGAACTGCGTGTTATGATGTGCAGGTTGATGTGCCTCTTCCACTACAGAAAGATATGTCGGCATTCTTAACAAGTATGGAGAGTCACAAAGAAATTGATGCTTTTGATGAAGTGATTTGTACGTCCGTAAAGAAGATCCATGAGCATCTTAGGAGACGAGCTTTCCTTCTTGGCTTTAGTCAGTCTCCAGCAGAGTTTATTAATGCCTTGATAGTTTCTCAGGGTAAGGATTTAAAGCTTGTTGCCGGAGATGCCAGCCATAATGCCGAAAAGGAACAGCGTTCTGAATTCTACAATCAACCATGGGTTGAGGATGCTGTCATTCGCTATCTGAACCGGAAAAGTGCTCGAACTGATGCTCCTTGA 1641 0.4284 MNNNNNPPKIPATAQPSFLGSSSIAVNPPQPIHLLTQSHPQTQGSSSTFPGHFQLSQPQPHVIAQQQPQFPNPRSHPQTQLQQQQQKQQQSVSQMHINNNTNVASPATAATTTTAAATTTTSAKRAHQKSSSRPQGSPSGNQTSAFKTMELTPAPLRKKRNLQENLIPEKVAKLVPESAIYTRLLELEAQIDAVLNRKKIDVQEAVKNPHSVRKTLRVYVYNTFSNQTKLDSGKVGGVEEPSWSLRLTGRILEEVGKDSVVGGVSKKESLYPKFSAFFKKITVYLDQGFYPDNHVMVWDSARSSVQQDGFEVKRKGDKEFTAVIRLTMNYSPEKFMVSTPLAKVLGIEFDTRPRIMAALWNYVKFRKLQSPNDPSFFMCDASLQKVFGEEKMKFSLASQKISQHLSQPQPIHLEHKIKLSGNCPAGTACYDVQVDVPLPLQKDMSAFLTSMESHKEIDAFDEVICTSVKKIHEHLRRRAFLLGFSQSPAEFINALIVSQGKDLKLVAGDASHNAEKEQRSEFYNQPWVEDAVIRYLNRKSARTDAP* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2753 546 ProSiteProfiles SWIB/MDM2 domain profile. 330 407 IPR003121 -
Tpr5g2753 546 MobiDBLite consensus disorder prediction 67 149 - -
Tpr5g2753 546 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 105 546 - -
Tpr5g2753 546 MobiDBLite consensus disorder prediction 1 48 - -
Tpr5g2753 546 CDD SWIB_like 337 405 - -
Tpr5g2753 546 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 105 546 - -
Tpr5g2753 546 MobiDBLite consensus disorder prediction 67 157 - -
Tpr5g2753 546 SUPERFAMILY SWIB/MDM2 domain 325 415 IPR036885 -
Tpr5g2753 546 Pfam SWIB/MDM2 domain 334 405 IPR003121 -
Tpr5g2753 546 Gene3D SWIB/MDM2 domain 327 412 IPR036885 -
Tpr5g2753 546 SMART swib_2 331 410 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2753 Tpr-Chr5 49651964 49656463 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Tpr5g2753 SWIB 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2753 K11650 - gmx:100817271 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2753 5 49651964 49656463 Tpr5g2753 5 49651964 49656463 ECH
Tpr5g2753 5 49651964 49656463 Tpr5g2753 5 49651964 49656463 PCT