Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2718 ATGGATGGATCAACCGGTAACCGAAATAATCCACCGTCAGCCATGTCACCACCGCCTGAGCCATCACCGGAAAGTCTCCGTCACGTGAAGCGTATGCTTAATTCCAACCATTATACATCACCTTCTAGAACAATCTACTCCGATAGGTTTATTCCGAGTAGATCTGCGTCCAAATTCGCTCTCTTTGATATCAATACTCCGACGGAAGGAAGAGATGATAGTTCTAGCGCTTACACCACTCTTCTTCGTACCGCTTTGTTTGGACCCGATGTTGCCGGTGTTGTAGCTCCTGTAACGCCGGAGAAGATGGACTCGCCGTCGATGACATTACCGAGCAGGAATATTTTTAGGTATAAGACGGAGACTCGTCAGTCCATGCATTCGCTTTCGCCGTTTATGTCGGATGATGTTGTTCCCGGTGTTAATCATAGTCCGGTTAAGGCTCCGAGGAAGGTTCCTCGATCGCCTTATAAGGTTTTGGATGCACCTGCATTGCAAGATGATTTTTATCTGAATCTGGTGGATTGGTCTTCACACAATGTGTTGGCTGTTGGTTTGGGAAATTGTGTTTATCTCTGGAATGCTTGTAGCAGCAAGGTAACTAAATTATGCGATTTAGGGGTTGATGACTGTGTTTGTTCTGTTGGCTGGGCTCAACGTGGTACTCATCTTGCTGTTGGAACGAACAATGGTAAAGTTCAGATTTGGGATGCAGCACGATGCAAGAAGATAAGATCTATGGAGGGTCATCGGTTACGGGTCGGGGCCTTGGCCTGGAGTTCATCTCTTTTATCTTCTGGTGGTCGGGATAAGAATATTTATCAACGAGATATACGCACACAAGAGGATTTTGTTAGTAAACTGTCAGGACACAAATCAGAGGTTTGTGGACTGAAGTGGTCATATGATAACCGCGAGTTAGCATCTGGAGGAAATGACAACAGATTGTTTGTTTGGAATCAACACTCGACCCAGCCTGTCCTGAAATACTGCGAGCACACTGCAGCTGTTAAAGCTATTGCATGGTCACCTCATCTTCATGGACTTCTTGCATCTGGAGGAGGAACTGCAGATCGATGTATTCGTTTCTGGAATACAACCACAAACTCACACTTAAGCTGTATGGACACTGGAAGTCAGGTTTGCAATCTTGTCTGGTCCAAAAATGTCAATGAACTAGTAAGCACACATGGCTACTCCCAGAACCAGATAATTGTCTGGAGATACCCCACAATGTCAAAGTTGGCTACTCTTACAGGCCATACATATAGGGTTCTTTATCTTGCCATCTCTCCAGATGGACAGACTATTGTAACTGGAGCTGGAGATGAAACACTTAGGTTCTGGAATGTATTCCCTTCTCCTAAATCACAGAATACTGAAAGTGAAATCGGAGCATTATCTCTTGGAAGAACTACAATCAGATGA 1428 0.4475 MDGSTGNRNNPPSAMSPPPEPSPESLRHVKRMLNSNHYTSPSRTIYSDRFIPSRSASKFALFDINTPTEGRDDSSSAYTTLLRTALFGPDVAGVVAPVTPEKMDSPSMTLPSRNIFRYKTETRQSMHSLSPFMSDDVVPGVNHSPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGVDDCVCSVGWAQRGTHLAVGTNNGKVQIWDAARCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRTQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTESEIGALSLGRTTIR* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2718 475 SMART WD40_4 411 450 IPR001680 GO:0005515
Tpr5g2718 475 SMART WD40_4 281 320 IPR001680 GO:0005515
Tpr5g2718 475 SMART WD40_4 323 365 IPR001680 GO:0005515
Tpr5g2718 475 SMART WD40_4 153 194 IPR001680 GO:0005515
Tpr5g2718 475 SMART WD40_4 197 237 IPR001680 GO:0005515
Tpr5g2718 475 SMART WD40_4 240 277 IPR001680 GO:0005515
Tpr5g2718 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 246 IPR001680 GO:0005515
Tpr5g2718 475 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 11 475 IPR033010 GO:0010997|GO:0097027|GO:1904668
Tpr5g2718 475 PANTHER PROTEIN FIZZY-RELATED 1 11 475 - -
Tpr5g2718 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 451 IPR001680 GO:0005515
Tpr5g2718 475 ProSitePatterns Trp-Asp (WD) repeats signature. 437 451 IPR019775 -
Tpr5g2718 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 329 IPR001680 GO:0005515
Tpr5g2718 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 451 - -
Tpr5g2718 475 Gene3D - 146 455 IPR015943 GO:0005515
Tpr5g2718 475 MobiDBLite consensus disorder prediction 1 26 - -
Tpr5g2718 475 Pfam WD domain, G-beta repeat 414 450 IPR001680 GO:0005515
Tpr5g2718 475 Pfam WD domain, G-beta repeat 285 320 IPR001680 GO:0005515
Tpr5g2718 475 Pfam WD domain, G-beta repeat 325 365 IPR001680 GO:0005515
Tpr5g2718 475 SUPERFAMILY WD40 repeat-like 157 457 IPR036322 GO:0005515
Tpr5g2718 475 Pfam Anaphase-promoting complex subunit 4 WD40 domain 205 261 IPR024977 -
Tpr5g2718 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2718 Tpr-Chr5 49352365 49358521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2718 224 453 Miscellaneous Gene Families AT5G08390 21.459 1.96e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2718 K03364 - gmx:100780928 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2718 5 49352365 49358521 Tpr5g2718 5 49352365 49358521 ECH