Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2448 ATGTCTTGTTCCTTCAAATGTTTCCATTTTTCCATCATCATATTCATGTTACATGTCTTTACTACAACACAAATTTCATCATCAACAGATGATTCTTCATTCAACAATTTTCTTGACAGTGCCAAGAGTTCTGAGGTTTTTGATTGGATGATCAATATCAGAAGGAAAATTCATGAGAATCCTGAATTGGGTTATCAAGAATTTGAAACAAGTGAACTGATAAGATCAGAATTAGATAAAATGGACATACCTTATAAACATCCAGTTGCAATCACTGGTGTCATTGGTTTCATAGGAACTGGATCCTCTCCTTTTGTTGCTTTAAGAGCTGACATGGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGAGCATAAGAGTAAAGTAGCCGGAAAGATGCACGCGTGTGGTCATGATGCTCATGTTACCATGGTACTTGGTGCTGCAAAGATTCTTAAACAGCATGAAAAAGAGATACAGGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGACACTGGAGCATTAGAAAATGTTACCGCTATATTTGGACTACATATTGCTCCTGACTTACCAATAGGTGAAGTGGCCTCTAAGTCTGGTCCAATATTGGCTGGAAGTGGCTTCTTTGAAGCAAAAATAAGTGGAAAGGGTGGTCATGCAGCTATTCCTCAACAGTCTATCGACCCTATATTGGCAGCTTCCAATGTCATTCTTAGTTTACAACACCTTGTTTCTCGCGAGGCTGATCCTTTAGACTCACAGGTTGTGACGATTGGAAAGTGCCAAGGAGGTAGTGCATACAATGTTATTCCAGATTCTGTCACAATTGGTGGCACCTTCCGAGCCTTTTCTAAACAAAGCTTCAACCAACTGAAACAGCGGATTGAGCAGGTTATCATCGGGCAAGTTGCTGTGCAAAGGTGCAATGCAACTGTGGACTTCCTTGATGAAGTGAAACCTTTCTATCCTCCAACTATAAACAATGGCGACTTGCATGAACATTTTGTGAATGTGGCAGTGAATATGCTAGGTATCAATAAAGTCGAAAGTGCCATGTCTCCATTCATGGGAGCTGAAGACTTTTCATTCTATCAAGAGGTCATACCTGGTTACTTTTTCTTCCTTGGAATGAAGAATGCCGAACATGAACGGTTTGTGCCATCATTACACTCACCTTATCTCAAAATCAATGAAGATGGACTCCCTTACGGAGCTGCACTTCATGCATCATTAGCAGCTAGTTATCTTCTAAAACATCAGCAGGATATTGTACCTGGTGTTGAGAAAAAATATCGCGATGAATTATAA 1341 0.4042 MSCSFKCFHFSIIIFMLHVFTTTQISSSTDDSSFNNFLDSAKSSEVFDWMINIRRKIHENPELGYQEFETSELIRSELDKMDIPYKHPVAITGVIGFIGTGSSPFVALRADMDALPMQEMVEWEHKSKVAGKMHACGHDAHVTMVLGAAKILKQHEKEIQGTVVLVFQPAEEGGGGAKKILDTGALENVTAIFGLHIAPDLPIGEVASKSGPILAGSGFFEAKISGKGGHAAIPQQSIDPILAASNVILSLQHLVSREADPLDSQVVTIGKCQGGSAYNVIPDSVTIGGTFRAFSKQSFNQLKQRIEQVIIGQVAVQRCNATVDFLDEVKPFYPPTINNGDLHEHFVNVAVNMLGINKVESAMSPFMGAEDFSFYQEVIPGYFFFLGMKNAEHERFVPSLHSPYLKINEDGLPYGAALHASLAASYLLKHQQDIVPGVEKKYRDEL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2448 446 PANTHER AUXIN CONJUGATE HYDROLASE 8 446 - -
Tpr5g2448 446 Pfam Peptidase dimerisation domain 216 310 IPR011650 -
Tpr5g2448 446 PANTHER PEPTIDASE M20 FAMILY MEMBER 8 446 IPR017439 GO:0016787
Tpr5g2448 446 SUPERFAMILY Zn-dependent exopeptidases 44 429 - -
Tpr5g2448 446 TIGRFAM amidohydrolases: amidohydrolase 50 414 IPR017439 GO:0016787
Tpr5g2448 446 CDD M20_IAA_Hyd 50 415 IPR044757 GO:0009850|GO:0016787
Tpr5g2448 446 Gene3D - 215 333 - -
Tpr5g2448 446 SUPERFAMILY Bacterial exopeptidase dimerisation domain 215 334 IPR036264 -
Tpr5g2448 446 Pfam Peptidase family M20/M25/M40 107 423 IPR002933 GO:0016787
Tpr5g2448 446 PIRSF Amidohydrol_AmhX 37 431 IPR017439 GO:0016787
Tpr5g2448 446 Gene3D Zn peptidases 50 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2448 Tpr-Chr5 46103083 46106724 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2448 K21604 K14664 gmx:100789077 674.085