Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2446 ATGGCTTATTCCTTCAAATGTTTCCATTTTTTCATCATCATATTCATATTACATGTATTTACTACAACACAAATTTCATCATCAACAGATGATTCTTCATTCAACAATTTTCTTGACAGTGCCAAGAGTCCTGAGATTTTTGATTGGATGATCAATATCAGAAGGAAAATTCATGAGAATCCTGAATTGGGTTATGAAGAATTTGAAACAAGTGAACTGATAAGATCAGAACTGGATAAAATGAATATCCCTTATAAACATCCAGTTGCAATCACTGGTGTCATTGGTTTCATAGGAACTGGATTCTCTCCTTTTGTTGCTTTAAGAGCTGATATGGATGCTCTTCCTATGCAGGAAATGGTGGAATGGGAGCATAAGAGTAAAGTACCTGGAAAGATGCACTCATGTGGTCATGATGCTCATGTTGCTATGTTACTTGCTGCTGCAAAAATTCTCAAAGAGCATGAAAAAGACATACAAGGAACTGTTGTTCTTGTTTTTCAACCAGCCGAGGAAGGAGGTGCCGGGGCTAAGAAAATTTTAGATGCTGGAGCATTAGAAAATGTTACAGCTATCTTTGGATTGCATATTGATCCTGAATTACCAATAGGTGAAGTGGCCTCTAGGTCTGGTCCGATAATGGCAGGAAGTGGCTTCTTTGAAGCAAAAATAAGTGGAAAAGGAGGTCATGCAGCTATTCCTCAACAGTCTATAGACCCTATATTGGCAGCTTCCAATGTGATTATCAGCTTACAACACCTTGTTTCTCGCGAGGCTGATCCTCTAGACTCCCAGGTAGTGACGATTGCCAAGTTCGAAGGAGGTAGTGCGTTCAATGTTATTCCGGATTATGTCACAATTGGTGGCACTTTCCGAGCCTTTTCTAAACAAAGTTTCAACCAACTGAGACAGCGGATTGAGCAGGTTATCATTGGTCAAGCTGCTGTGCAGAGGTGCAATGCAACTGTGGACTTTCTTGAAGAATGGGAACCTTTCAATCCTCCAACTGTAAACAACGGTGAACTGCATGAGCATTTTGTGAATGTTGCGGTGAATATGTTTGGTATCGATAAAGTTAATAGTGTCATGACACCATCCATGGGAGCTGAAGATTTTTCATTCTATCAAGAGGTCATACCTGGTTACTTCTTCTTCCTTGGAGTGAAGAATGCCTCGGATAAAGAGGCCGAGTCGTTTCACTCACCTTATCTCAAAATCAATGAAGATGGACTGCCTTATGGCGCTGCACTTCATGCATCTTTAGCAGCTAGTTATCTACTAAAACATGAGCATGATGTACCTGGTGTTGAGGGCAAATATCATGATGAATTATAG 1335 0.4022 MAYSFKCFHFFIIIFILHVFTTTQISSSTDDSSFNNFLDSAKSPEIFDWMINIRRKIHENPELGYEEFETSELIRSELDKMNIPYKHPVAITGVIGFIGTGFSPFVALRADMDALPMQEMVEWEHKSKVPGKMHSCGHDAHVAMLLAAAKILKEHEKDIQGTVVLVFQPAEEGGAGAKKILDAGALENVTAIFGLHIDPELPIGEVASRSGPIMAGSGFFEAKISGKGGHAAIPQQSIDPILAASNVIISLQHLVSREADPLDSQVVTIAKFEGGSAFNVIPDYVTIGGTFRAFSKQSFNQLRQRIEQVIIGQAAVQRCNATVDFLEEWEPFNPPTVNNGELHEHFVNVAVNMFGIDKVNSVMTPSMGAEDFSFYQEVIPGYFFFLGVKNASDKEAESFHSPYLKINEDGLPYGAALHASLAASYLLKHEHDVPGVEGKYHDEL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2446 444 Pfam Peptidase dimerisation domain 216 310 IPR011650 -
Tpr5g2446 444 PANTHER AUXIN CONJUGATE HYDROLASE 8 444 - -
Tpr5g2446 444 Gene3D Zn peptidases 50 410 - -
Tpr5g2446 444 SUPERFAMILY Bacterial exopeptidase dimerisation domain 215 334 IPR036264 -
Tpr5g2446 444 PANTHER PEPTIDASE M20 FAMILY MEMBER 8 444 IPR017439 GO:0016787
Tpr5g2446 444 Gene3D - 215 333 - -
Tpr5g2446 444 TIGRFAM amidohydrolases: amidohydrolase 50 413 IPR017439 GO:0016787
Tpr5g2446 444 SUPERFAMILY Zn-dependent exopeptidases 45 428 - -
Tpr5g2446 444 Pfam Peptidase family M20/M25/M40 107 422 IPR002933 GO:0016787
Tpr5g2446 444 PIRSF Amidohydrol_AmhX 37 430 IPR017439 GO:0016787
Tpr5g2446 444 CDD M20_IAA_Hyd 50 414 IPR044757 GO:0009850|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2446 Tpr-Chr5 46094629 46098981 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2446 K21604 K14664 gmx:100789077 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2446 5 46094629 46098981 Tpr5g2446 5 46094629 46098981 ECH